Factsheet for Bra008769.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025713.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	Bra025713.1-P	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G14260.1	Thale cress	plastid	86.82	87.16
Bra023454.1-P	Field mustard	plastid	84.5	86.34
Zm00001d044101_P002	Maize	cytosol	55.04	74.15
VIT_14s0171g00310.t01	Wine grape	plastid	71.51	72.5
Solyc02g068050.2.1	Tomato	plastid	58.53	70.23
KRH57642	Soybean	plastid	68.02	69.78
KRG94324	Soybean	plastid	67.83	69.72
PGSC0003DMT400017960	Potato	plastid	70.35	69.14
GSMUA_Achr3P16970_001	Banana	plastid	67.83	68.76
TraesCS5A01G106100.1	Wheat	golgi	63.57	65.47
TraesCS5D01G123700.2	Wheat	plastid	63.37	65.27
EES01150	Sorghum	plastid	62.6	63.09
Os12t0236900-01	Rice	plastid	62.21	63.06
HORVU5Hr1G033180.3	Barley	mitochondrion	62.79	61.13
TraesCS5B01G110900.1	Wheat	plastid	63.18	60.82
Zm00001d011448_P002	Maize	plastid	61.82	59.07
CDX69594	Canola	cytosol	92.25	51.91
CDY57896	Canola	cytosol	91.28	51.36
Bra040022.1-P	Field mustard	plastid	23.26	23.67
Bra026865.1-P	Field mustard	plastid	18.99	20.25
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	12.79	20.18
Bra007140.1-P	Field mustard	mitochondrion	15.89	18.39
Bra028018.1-P	Field mustard	cytosol	4.84	17.48
Bra040023.1-P	Field mustard	endoplasmic reticulum	5.04	12.5
Bra029668.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	4.65	11.54

Protein Annotations

EnsemblPlants:Bra008769.1	EnsemblPlants:Bra008769.1-P	EnsemblPlantsGene:Bra008769	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	InterPro:IPR036464
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	PFAM:PF09273	SEG:seg
SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0002545375	UniProt:M4CX22	MapMan:35.2	:

Description

AT5G14260 (E=1e-247) | SET domain-containing protein

Coordinates

chrA10:-:13770544..13773129

Molecular Weight (calculated)

57596.2 Da

IEP (calculated)

6.756

GRAVY (calculated)

-0.266

Length

516 amino acids

Sequence
(BLAST)

001: MEGIITCFHP KCVSLPIRSS PLSRVSSLSQ LRNRNSLSSS RSVPQRSLCV SSSSSDTLLA GGSSKEDERQ SKISSRKEGD DTGDLKHWLD KNGLPPCKVL
101: LKERPAHDQN HKPIHYVAAS EDLQKGDVAF SVPDSLVVTL ERVLGNETIA ELLTTNKLSE LACLALYLMY EKKQGKKSVW YPYIRELDRQ RGRGQLDVES
201: PLLWSEAELE YLTGSPTKAE VLERAEGIKR EYSELDTVWF MAGSLFQQYP FDIPTEAFTF EIFKQAFAAV QSCVVHLQNV SLARRFALVP LGPPLLAYCS
301: NCKAMLTAVD GAVQLVVDRP YKAGDPIVVW CGPQPNAKLL LNYGFIDEDN PYDRIIVEAA LSTDDPQYQD KRLVAQRNGK LSQQVFQVRV GKEKEAVQDM
401: LPYLRLGYMS DPAEMQSVIS SQGPVCSMSP CMERAVLDQL ADYFMRRLAG YPTTLKEDDA LVYYPSLNPR KRVATRLVRL EKKMLAACLV ATVDLLNELP
501: DTTISPCPAP YAPSLK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.