CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92157
EER97533
EER98969

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	EER92157	AT1G19180.1	21798944
AT5G14260.1	EER97533	AT1G19180.1	21798944
AT5G14260.1	EER98969	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044101_P002	Maize	cytosol	72.46	96.87
Zm00001d011448_P002	Maize	plastid	93.16	88.33
Os12t0236900-01	Rice	plastid	82.62	83.1
TraesCS5D01G123700.2	Wheat	plastid	81.05	82.83
TraesCS5A01G106100.1	Wheat	golgi	80.86	82.63
HORVU5Hr1G033180.3	Barley	mitochondrion	79.88	77.17
TraesCS5B01G110900.1	Wheat	plastid	80.66	77.05
CDX91073	Canola	mitochondrion, nucleus, plastid	58.4	69.7
GSMUA_Achr3P16970_001	Banana	plastid	66.21	66.6
VIT_14s0171g00310.t01	Wine grape	plastid	64.84	65.23
KRG94324	Soybean	plastid	63.09	64.34
Bra023454.1-P	Field mustard	plastid	63.28	64.16
CDX85607	Canola	plastid	46.48	64.15
KRH57642	Soybean	plastid	62.89	64.02
CDX85606	Canola	cytosol	12.7	63.73
AT5G14260.1	Thale cress	plastid	63.09	62.84
Bra008769.1-P	Field mustard	plastid	63.09	62.6
PGSC0003DMT400017960	Potato	plastid	62.11	60.57
Solyc02g068050.2.1	Tomato	plastid	50.2	59.77
CDX69594	Canola	cytosol	62.5	34.9
CDY57896	Canola	cytosol	62.3	34.79
EES07338	Sorghum	plastid	21.88	22.44
KXG35611	Sorghum	plastid	20.51	21.43

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.1	EntrezGene:8054936	UniProt:C5XEJ8	EnsemblPlants:EES01150
ProteinID:EES01150	ProteinID:EES01150.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016279	GO:GO:0016740	GO:GO:0018026
GO:GO:0019538	InterPro:IPR036464	PFAM:PF09273	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9	InterPro:Rubisco_LSMT_subst-bd
InterPro:Rubisco_LSMT_subst-bd_sf	EnsemblPlantsGene:SORBI_3003G233700	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI0001A8446B	RefSeq:XP_002456030.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:57257249..57263009

Molecular Weight (calculated)

56885.2 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.240

Length

512 amino acids

Sequence
(BLAST)

001: MASVSPAAAA AAVSGSHHGR LLLPSSPRRL PRPRPRPRPR LRLAACHADT LLPSSSSEAR APPAPAVDPS SESATDCFVD WLRARGLPPG KVDIRERPVP
101: CLLNGKDLPL RYVAAGVDLQ AGDVAFEVPM SLVVTLERVL GDESIAELLT NNKLSELACL ALYLMYEKKQ GKDSFWYPYI KELDRHRGRG QLAVESPLLW
201: TESELDYLTG SPLKDEVVAR DEAIRREYNE LDTLWFMAGS LFQQYPFDIP TEAFPFEIFK QAFVAVQSCV VHLQKVSLAR RFALVPLGPP LLTYKSNCKA
301: MLTADGDSVR LVVDRPYKAG EPIIIWCGPQ TNSRLVLNYG FVDEDNPFDR IAIEASLNSE DPQYQEKRMV AQRNGKLAIQ NFNVYVGKEK QTVAEMLPYL
401: RLGYISDPDE MQSILSSEGD TCPLSPCTER AVLDQLVGYL ESRLAGYPTT LDEDEAMLAD GSLEPKKEVA TRLVRLEKKM IHACLQATNE FINDLPDHTV
501: SPCPAPYAPE LK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.