CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY26697
CDY41023

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14260.1	CDY26697	AT1G19180.1	21798944
AT5G14260.1	CDY41023	AT1G19180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69594	Canola	cytosol	96.62	96.62
Bra008769.1-P	Field mustard	plastid	51.36	91.28
CDX91073	Canola	mitochondrion, nucleus, plastid	41.88	89.51
AT5G14260.1	Thale cress	plastid	46.67	83.27
CDX85606	Canola	cytosol	9.16	82.35
CDX85607	Canola	plastid	30.53	75.47
Zm00001d044101_P002	Maize	cytosol	31.19	74.67
VIT_14s0171g00310.t01	Wine grape	plastid	40.79	73.48
KRH57642	Soybean	plastid	38.5	70.18
KRG94324	Soybean	plastid	38.28	69.92
Solyc02g068050.2.1	Tomato	plastid	32.5	69.3
GSMUA_Achr3P16970_001	Banana	plastid	38.39	69.16
PGSC0003DMT400017960	Potato	plastid	39.26	68.57
TraesCS5D01G123700.2	Wheat	plastid	35.22	64.47
TraesCS5A01G106100.1	Wheat	golgi	35.11	64.27
EES01150	Sorghum	plastid	34.79	62.3
Os12t0236900-01	Rice	plastid	34.35	61.89
TraesCS5B01G110900.1	Wheat	plastid	35.66	61.01
HORVU5Hr1G033180.3	Barley	mitochondrion	35.01	60.57
Zm00001d011448_P002	Maize	plastid	34.46	58.52
CDX93745	Canola	cytosol	4.14	23.75
CDY22127	Canola	plastid	13.09	23.67
CDY16126	Canola	plastid	11.01	20.82
CDX73405	Canola	mitochondrion	6.98	20.71
CDY33784	Canola	plastid	10.8	20.45
CDY40200	Canola	mitochondrion	9.6	18.84
CDY36426	Canola	cytosol	1.31	16.9
CDY40197	Canola	cytosol	2.94	15.88
CDY07978	Canola	endoplasmic reticulum	2.73	11.96
CDX74033	Canola	endoplasmic reticulum	2.62	11.54

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.3	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	UniProt:A0A078J2Z1	EnsemblPlants:CDY57896
ProteinID:CDY57896	ProteinID:CDY57896.1	ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00022795001	InterPro:IPR000717	InterPro:IPR036464
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09273	PFscan:PS50250	PANTHER:PTHR13271	PANTHER:PTHR13271:SF9
InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	SUPFAM:SSF81822
SUPFAM:SSF82199	UniParc:UPI0004EEA396	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC09g54420DBnaC09g54420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2Z1]

Coordinates

chrLK033614:+:16790..23181

Molecular Weight (calculated)

102346.0 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.208

Length

917 amino acids

Sequence
(BLAST)

001: MNSAESLIKS IQGLSASPGD LSALHGILKK AEDSLRNNWD VQLATLEELD PSIHSLGYLY LLEGLTRGSV SKGKTSGVVL LMARFINRCD AGQIRLASEK
101: FVTLCKRFKD RVLELEDPLR GVAPLVSAVR KVQVSAKCLT ALHPDCLQLC LEAKCYKSGF SILSDDILEV DQPRDFYLYC YYGGMICIGL KRFQKASELL
201: YNVVTAPMYQ LNAIALEAYK KYILVNLIHS GQFSNSLPKC ASTAAQRHLK SWCIPYNEVG NRYNDGKISE LEAVVVAHSS DFEKDNNLGL VKQAVASLYK
301: RNILRLTQKY VTLSLQDIAN MVQLANAKEA EMHVLQMIHD GQIHALINQK DGMVRFLEDP EQYKTSEMIE VMDSVIQRAI GLSKNLIAMD ESLSCDPLYL
401: GKVGRERQKF DFGDDIDTVP QKFSMVSSLS QLRNRNSLSS YRSVPQRKLC VSSSSSDTLI AGGSSKEDER QSKASSKKEG DDSGDLKHWL DRNGLPPCKV
501: LLKERPAHDQ NHKPIHYVAA SEDLQKGDVA FSVPDSLVVT LERVLGNETI AELLTTNKLS ELACLALYLM YEKKQGKKSV WYPYIRELDR QRGRGHLDVE
601: SPLLWSEAEL EYLTGSPTKA EVLERAEGIK REYSELDTVW FMAGSLFQQY PFDIPTEAFS FEIFKQAFAA VQSCVVHLQN VSLARRFALV PLGPPLLAYC
701: SNCKAMLTAV DGAVQLVVDR PYKAGDPIVV WCGPQPNAKL LLNYGFVDED NPYDRIIVEA ALSTDDPQYQ DKRLVAQRNG KLSQQVFQVR VGKEKEAVQD
801: MLPYLRLGYM SDPAEMQSVI SSQGPVCSMS PCMEKAVLDQ LADYFMRRLA GYPTTLKEDD ALLADPSLNP RKRVATRLVR LEKKMLAACL VATVDLLNEL
901: PDTTISPCPA PYAPSLK

Best Arabidopsis Sequence Match ( AT5G14260.2 )
(BLAST)

001: MEGVITCFHT KCVSLPIRSF PLSRVSSLPR WRNNKLISSS RSVHLRSLCV SSSDTLVASG SPKEDERQSK VSSKKEGDDS EDLKFWMDKN GLPPCKVILK
101: ERPAHDQKHK PIHYVAASED LQKGDVAFSV PDSLVVTLER VLGNETIAEL LTTNKLSELA CLALYLMYEK KQGKKSVWYP YIRELDRQRG RGQLDAESPL
201: LWSEAELDYL TGSPTKAEVL ERAEGIKREY NELDTVWFMA GSLFQQYPFD IPTEAFSFEI FKQAFVAIQS CVVHLQNVGL ARRFALVPLG PPLLAYCSNC
301: KAMLTAVDGA VELVVDRPYK AGDPIVVWCG PQPNAKLLLN YGFVDEDNPY DRVIVEAALN TEDPQYQDKR MVAQRNGKLS QQVFQVRVGK EREAVQDMLP
401: YLRLGYMSDP SEMQSVISSQ GPVCPMSPCM ERAVLDQLAN YFMRRLSGYP TTPKEDDALL ADPSLSPRKR VATRLVQLEK KILVACLTTT VDLLNQLPDT
501: AISPCPAPYA PSLK

Arabidopsis Description

Rubisco methyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8VZB5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.