Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74033 | Canola | endoplasmic reticulum | 99.52 | 100.0 |
| Bra040023.1-P | Field mustard | endoplasmic reticulum | 98.09 | 98.56 |
| CDY36426 | Canola | cytosol | 3.35 | 9.86 |
| CDX85606 | Canola | cytosol | 3.83 | 7.84 |
| CDY40197 | Canola | cytosol | 5.74 | 7.06 |
| CDY33784 | Canola | plastid | 14.83 | 6.4 |
| CDX93745 | Canola | cytosol | 4.78 | 6.25 |
| CDY16126 | Canola | plastid | 14.35 | 6.19 |
| CDX73405 | Canola | mitochondrion | 8.61 | 5.83 |
| CDY40200 | Canola | mitochondrion | 12.92 | 5.78 |
| CDX91073 | Canola | mitochondrion, nucleus, plastid | 11.0 | 5.36 |
| CDY22127 | Canola | plastid | 12.92 | 5.33 |
| CDX85607 | Canola | plastid | 8.13 | 4.58 |
| Solyc06g036670.1.1 | Tomato | cytosol | 4.31 | 4.04 |
| CDX69594 | Canola | cytosol | 11.96 | 2.73 |
| CDY57896 | Canola | cytosol | 11.96 | 2.73 |
Protein Annotations
| EnsemblPlants:CDY07978 | EnsemblPlantsGene:GSBRNA2T00125197001 | GO:A0A078F8A1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:GOLD_dom | InterPro:GOLD_dom_sf | InterPro:IPR009038 | InterPro:TMP21-related | PANTHER:PTHR22811 | PANTHER:PTHR22811:SF50 |
| PFAM:PF01105 | PFscan:PS50866 | ProteinID:CDY07978 | ProteinID:CDY07978.1 | SignalP:SignalP-noTM | SMART:SM01190 |
| SUPFAM:SSF101576 | TMHMM:TMhelix | UniParc:UPI0004EC8CF5 | UniProt:A0A078F8A1 | MapMan:22.3.5.1 | : |
Description
BnaC03g35450DBnaC03g35450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8A1]
Coordinates
chrLK031982:-:398155..399480
Molecular Weight (calculated)
24339.0 Da
IEP (calculated)
6.370
GRAVY (calculated)
-0.222
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLKATIVVL LGLVWSFQAA LGIRFVIDRE ECFSHKAEYE GDTLHVSFVV IKSDSQWHFN EDGVDLVIHG PTGEQVHDFR EQISAKHDFV VQKKGVYRFC
101: FTNKSPYHET IDFDVQLGHF AYYDQHAKDE HFTPLMEQIS KLEEALYNIQ FEQHWLEAQT DRQAIVNENM SKRAVHKALF ESFALIGASV LQVYLLRRLF
201: ERKLGMSRV
101: FTNKSPYHET IDFDVQLGHF AYYDQHAKDE HFTPLMEQIS KLEEALYNIQ FEQHWLEAQT DRQAIVNENM SKRAVHKALF ESFALIGASV LQVYLLRRLF
201: ERKLGMSRV
001: MSLKGTIVLL GLLWSFQATL GIRFVIDREE CFSHKAEYEG DTLHVSFVVI KSDSQWHFNE DGVDLVIHGP TGEQIHDFRE QISAKHDFVV QKKGVYRFCF
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASFL QVYLLRRLFE
201: RKLGMSRV
101: TNKSPYHETI DFDVQLGHFA YYDQHAKDEH FTPLMEQISK LEEALYNIQF EQHWLEAQTD RQAIVNENMS KRAVHKALFE SFALIGASFL QVYLLRRLFE
201: RKLGMSRV
Arabidopsis Description
Transmembrane emp24 domain-containing protein p24beta2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7M9]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.