CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007140.1-P	Field mustard	mitochondrion	90.0	34.3
CDY40200	Canola	mitochondrion	90.0	32.76
AT3G55080.1	Thale cress	mitochondrion	77.65	28.51
VIT_13s0067g03620.t01	Wine grape	cytosol	51.18	19.33
KRH36235	Soybean	mitochondrion	49.41	18.38
TraesCS3D01G544800.2	Wheat	mitochondrion	40.0	14.95
GSMUA_Achr11P...	Banana	mitochondrion	44.12	14.65
TraesCS3A01G539300.2	Wheat	mitochondrion	37.65	13.76
Os01t0976450-00	Rice	mitochondrion	24.71	10.97
CDX85606	Canola	cytosol	6.47	10.78
CDY36426	Canola	cytosol	4.12	9.86
CDY22127	Canola	plastid	22.94	7.69
CDX91073	Canola	mitochondrion, nucleus, plastid	15.29	6.06
CDY33784	Canola	plastid	16.47	5.79
CDY16126	Canola	plastid	16.47	5.77
CDX74033	Canola	endoplasmic reticulum	7.06	5.77
CDY07978	Canola	endoplasmic reticulum	7.06	5.74
CDX73405	Canola	mitochondrion	8.82	4.85
TraesCS3B01G605100.1	Wheat	mitochondrion	30.59	4.17
CDX85607	Canola	plastid	7.06	3.23
CDY57896	Canola	cytosol	15.88	2.94
CDX69594	Canola	cytosol	15.88	2.94
Solyc06g036700.1.1	Tomato	mitochondrion	1.18	0.99
CDX93745	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY40197	EnsemblPlantsGene:GSBRNA2T00069339001	Gene3D:3.90.1420.10	InterPro:IPR036464	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	PFAM:PF09273	ProteinID:CDY40197	ProteinID:CDY40197.1	UniParc:UPI0004EDFCF2
UniProt:A0A078HQS9	MapMan:35.2	:	:	:	:

Description

BnaA09g34790DBnaA09g34790D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078HQS9]

Coordinates

chrLK032466:-:1..950

Molecular Weight (calculated)

19643.6 Da

IEP (calculated)

8.729

GRAVY (calculated)

-0.461

Length

170 amino acids

Sequence
(BLAST)

001: MLDFGFTFPY NTHDEVQIQM DIPNDDPLRN MKLGLLQTHY TRSVKDINIF HSSYDTFTIK EVKSATGKGI PQSLRAFARL LSCTSPQELN DLSKEAEQND
101: GRLARLPFKD RSRELEAHKI ILAHINSLIV DHSVCIKELG ASNFRFESQR LTVRRQMARE LIFGELRHLK

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.