CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g03620.t01	Wine grape	cytosol	58.86	59.78
AT3G55080.1	Thale cress	mitochondrion	50.11	49.46
CDY40197	Canola	cytosol	18.38	49.41
CDX93745	Canola	cytosol	16.41	46.88
CDY40200	Canola	mitochondrion	47.7	46.68
Bra007140.1-P	Field mustard	mitochondrion	45.3	46.41
CDX73405	Canola	mitochondrion	30.85	45.63
GSMUA_Achr11P...	Banana	mitochondrion	49.45	44.14
TraesCS3D01G544800.2	Wheat	mitochondrion	42.23	42.42
Os01t0976450-00	Rice	mitochondrion	34.35	40.99
TraesCS3A01G539300.2	Wheat	mitochondrion	41.36	40.65
Solyc06g036700.1.1	Tomato	mitochondrion	17.29	38.92
Bra007135.1-P	Field mustard	cytosol, mitochondrion, plastid	26.26	36.7
Bra028018.1-P	Field mustard	cytosol	10.5	33.57
KRH17729	Soybean	plastid	23.63	21.64
KRH50559	Soybean	plastid	18.82	17.66
KRG89557	Soybean	plastid	18.82	17.66
KRH75058	Soybean	plastid	6.35	17.47
KRG94324	Soybean	plastid	18.38	16.73
KRH57642	Soybean	plastid	17.72	16.1
TraesCS3B01G605100.1	Wheat	mitochondrion	30.85	11.31

Protein Annotations

EntrezGene:100818002	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:35.1	UniProt:A0A0R0I0W2	EMBL:ACUP02006722
EnsemblPlantsGene:GLYMA_10G292500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001214	InterPro:IPR036464
EnsemblPlants:KRH36235	ProteinID:KRH36235	ProteinID:KRH36235.1	ProteinID:KRH36236.1	PFAM:PF00856	PFAM:PF09273
PANTHER:PTHR13271	PANTHER:PTHR13271:SF11	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom	SUPFAM:SSF82199
UniParc:UPI0003DED0D0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:51036620..51045094

Molecular Weight (calculated)

51697.1 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.141

Length

457 amino acids

Sequence
(BLAST)

001: MPFRVRTATA SRWWSLHTVF NTHCLCRNLY YSALSKRQFS GNCDDFLQWL ERKAACSISS SLFIGNSSYG RSLFASKIIQ TGDCILKVPY RVQITADNLL
101: PEIRSLIGEE VGNIAKLATV ILIEKKLGQG SEWYPYISCL PQQGELHNTV FWTESELEMI RPSSVYQETI DQKSQIEKDF LAIKHIFECS HQSFGDSTYK
201: DFMHACTLVG SRAWGSTNGL ALIPFADFLN HDGVSEAIVM SDDDKQCSEI IADRDYAPGE QVLIRYGKFS NATLMLDFGF TIPYNIYDQV QIQFDIPKHD
301: PLRDMKLELL HQYFIPPPED MKGLSHPVNS FSIKEVKSDS GKGKGLPQSL RALARVLSCT TSQEIDNLIA EAAQTDGRLA RRPLQDISKE IQAHMMLLSL
401: FIQLIEERSV AIMSLDSLSL CGRFSVRKLM AQDLLQGELR ILKSASAWLE NYCFSMT

Best Arabidopsis Sequence Match ( AT3G55080.1 )
(BLAST)

001: MLFCISTVKL FGFQQRRNVS SLAKRFSLAG KLTLELQTQA SLDNNFLPWL ERIAGAKITN TLSIGKSTYG RSLFASKVIY AGDCMLKVPF NAQITPDELP
101: SDIRVLLSNE VGNIGMLAAV LIREKKMGQK SRWVPYISRL PQPAEMHSSI FWGEDELSMI RCSAVHQETV KQKAQIEKDF SFVAQAFKQH CPIVTERPDL
201: EDFMYAYALV GSRAWENSKR ISLIPFADFM NHDGLSASIV LRDEDNQLSE VTADRNYSPG DEVFIKYGEF SNATLMLDFG FTFPYNIHDE VQIQMDVPND
301: DPLRNMKLGL LQTHHTRTVK DINIFHSSCD TFTIKEVKSA IGKGKGIPQS LRAFARVLCC IIPQELNDLS KEAAQNDGRL ARLPFKDGNR ELEAHKILLS
401: HINRLIEDHS VCIKEMEECY FVSQRFAVRR QMARDLLYGE LRVLRSAAEW LNHYCTTLLS ETM

Arabidopsis Description

At3g55080 [Source:UniProtKB/TrEMBL;Acc:Q5PP40]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.