CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	KRH10001	AT3G13720.1	21798944
AT3G07670.1	KRH23330	AT3G13720.1	21798944
AT3G07670.1	KRH44167	AT3G13720.1	21798944
AT3G07670.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0057g01250.t01	Wine grape	plastid	74.35	74.65
PGSC0003DMT400044855	Potato	plastid	71.54	70.83
Solyc07g045310.2.1	Tomato	nucleus	70.34	70.06
AT3G07670.1	Thale cress	plastid	68.14	67.46
GSMUA_Achr3P10760_001	Banana	plastid	66.73	66.33
Bra040022.1-P	Field mustard	plastid	67.13	66.08
CDY22127	Canola	plastid	66.73	65.68
Os02t0725200-01	Rice	plasma membrane	65.13	64.74
Zm00001d051668_P001	Maize	plastid	64.13	63.62
EES07338	Sorghum	plastid	63.13	63.13
TraesCS6B01G315800.1	Wheat	plastid	62.73	61.74
TraesCS6D01G267500.2	Wheat	plastid	62.73	61.61
TraesCS6A01G286800.2	Wheat	plastid	61.92	61.31
Zm00001d051669_P002	Maize	plastid	62.53	61.06
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	62.53	59.77
Zm00001d034120_P001	Maize	cytosol	9.82	42.98
KRH75058	Soybean	plastid	8.42	25.3
KRH36235	Soybean	mitochondrion	21.64	23.63
KRG94324	Soybean	plastid	22.85	22.71
KRH57642	Soybean	plastid	22.44	22.27
KRH50559	Soybean	plastid	21.64	22.18
KRG89557	Soybean	plastid	21.24	21.77

Protein Annotations

EntrezGene:100803319	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:50.2.1	UniProt:A0A0R0GH45	EMBL:ACUP02007832
EnsemblPlantsGene:GLYMA_13G010500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016740	GO:GO:0030785	GO:GO:0032259	InterPro:IPR001214	InterPro:IPR011192
InterPro:IPR036464	EnsemblPlants:KRH17729	ProteinID:KRH17729	ProteinID:KRH17729.1	PFAM:PF00856	PFAM:PF09273
PIRSF:PIRSF009328	PFscan:PS50280	PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd
InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI00018C67C3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:2840980..2847284

Molecular Weight (calculated)

56401.6 Da

IEP (calculated)

8.241

GRAVY (calculated)

-0.258

Length

499 amino acids

Sequence
(BLAST)

001: MAMAMAEASR ITLHSTLLPF FTPKTHVGHR HLSLSSSRKH QVQCSVSAGA AAQTNPVAWG CEIDSLENSS ALQRWLSESG LPPQKMGIER VEVGERGLVA
101: LKNIRKGEKL LFVPPSLVIT PDSEWSCPEA GEVLKRNSVP DWPLLATYLI SEASLMESSR WSNYISALPR QPYSLLYWTQ AELDRYLEAS QIRERAIERI
201: NNVIGTYNDL RLRIFSKYPD LFPDEVFNIE SFKWSFGILF SRLVRLPSMG GNVALVPWAD MLNHSCDVET FLDYDKTSKG IVFTTDRPYQ PGEQVFISYG
301: KKSNGELLLS YGFVPKEGAN PSDSVELSLS LKKSDASYKE KLELLKNYGL SASQCFPIQI TGWPLELMAY AYLAVSPSSM RGDFEEMAAA ASNNTTSKKD
401: LRYPEIEEQA LQFILDSCES SISKYNKFLQ ASGSLDLDVT SPKQLNRRLF LKQLAVDLCT SERRILFRAQ YILRRKLRDM RAGELRALKI FNGFRNLFQ

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.