Factsheet for Os02t0725200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os05t0200280-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	Os01t0196500-01	AT3G13720.1	21798944
AT3G07670.1	Os05t0200280-01	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07338	Sorghum	plastid	85.46	85.97
Zm00001d051668_P001	Maize	plastid	86.06	85.88
TraesCS6A01G286800.2	Wheat	plastid	83.07	82.74
TraesCS6B01G315800.1	Wheat	plastid	83.27	82.45
TraesCS6D01G267500.2	Wheat	plastid	81.67	80.71
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	82.07	78.93
Zm00001d051669_P002	Maize	plastid	79.68	78.28
GSMUA_Achr3P10760_001	Banana	plastid	71.31	71.31
VIT_12s0057g01250.t01	Wine grape	plastid	69.72	70.42
AT3G07670.1	Thale cress	plastid	67.53	67.26
PGSC0003DMT400044855	Potato	plastid	66.93	66.67
Solyc07g045310.2.1	Tomato	nucleus	66.53	66.67
Bra040022.1-P	Field mustard	plastid	66.14	65.48
KRH17729	Soybean	plastid	64.74	65.13
CDY22127	Canola	plastid	65.74	65.09
Os12t0236900-01	Rice	plastid	23.71	23.38
Os01t0976450-00	Rice	mitochondrion	16.73	21.93
Os09t0411650-01	Rice	plastid	21.31	21.62
Os01t0976500-01	Rice	plasma membrane	12.95	6.83

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	EntrezGene:4330582	MapMan:50.2.1	EMBL:AK103602	ProteinID:BAD12920.1
ProteinID:BAD13045.1	ProteinID:BAF09896.1	ProteinID:BAS80687.1	ProteinID:EEE57721.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016279	GO:GO:0016740	GO:GO:0018026	GO:GO:0019538	GO:GO:0030785
GO:GO:0032259	InterPro:IPR001214	InterPro:IPR011192	InterPro:IPR036464	EnsemblPlantsGene:Os02g0725200	EnsemblPlants:Os02t0725200-01
PFAM:PF00856	PFAM:PF09273	PIRSF:PIRSF009328	PFscan:PS50280	PANTHER:PTHR13271	PANTHER:PTHR13271:SF81
UniProt:Q6Z5K4	InterPro:Rubisco_LSMT_MeTrfase_plant	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom	SMART:SM00317
SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI00003503C5	RefSeq:XP_015625194.1	SEG:seg	:

Description

SET protein 12SET domain containing protein. (Os02t0725200-01);Similar to Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I. (Os02t0725200-02)

Coordinates

chr2:+:30144260..30148692

Molecular Weight (calculated)

56351.6 Da

IEP (calculated)

9.162

GRAVY (calculated)

-0.249

Length

502 amino acids

Sequence
(BLAST)

001: MATAAALALH TQFRPPRSPR RLRQHLALPS GVLIRSPVRA SAASASASAP AQREAAAAGV PWGCEIESLE SAVSLERWLT DSGLPEQRLG IQRVDVGERG
101: LVALKNIRKG EKLLFVPPSL VITADSEWGC PEVGNVLKRN SVPDWPLIAT YLISEASLES SSRWSSYIAA LPRQPYSLLY WTRPELDAYL VASPIRERAI
201: QRITDVVGTY NDLRDRIFSK HSDLFPEEVY NLETFRWSFG ILFSRLVRLP SMDGRVALVP WADMLNHSPE VETFLDYDKS SGGIVFTTDR SYQPGEQVFI
301: SYGKKSSGEL LLSYGFVPKE GTNPNDSVEL LVSLNKSDKC YKEKLQALKR NGLSEFESFP LRVTGWPVEL MAYAFLVVSP PEMSQRFEEM AVAASNKSPS
401: KPGLNYPELE EQALQFILDC CESNIAKYTK FLEGSSGSLQ LSTNSKQANR TLLLKQLARD LCISERRILY RTQYILRRRL RDMRGGELKA LSLFNGLRKL
501: FK

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.