Factsheet for HORVU6Hr1G072050.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	HORVU1Hr1G028520.1	AT3G13720.1	21798944
AT3G07670.1	HORVU3Hr1G018940.2	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G315800.1	Wheat	plastid	94.83	97.63
TraesCS6A01G286800.2	Wheat	plastid	92.91	96.23
TraesCS6D01G267500.2	Wheat	plastid	93.3	95.87
Zm00001d051668_P001	Maize	plastid	79.69	82.7
EES07338	Sorghum	plastid	78.93	82.57
Os02t0725200-01	Rice	plasma membrane	78.93	82.07
Zm00001d051669_P002	Maize	plastid	72.8	74.36
GSMUA_Achr3P10760_001	Banana	plastid	64.56	67.13
VIT_12s0057g01250.t01	Wine grape	plastid	62.84	66.0
Solyc07g045310.2.1	Tomato	nucleus	62.84	65.47
PGSC0003DMT400044855	Potato	plastid	62.84	65.08
AT3G07670.1	Thale cress	plastid	62.84	65.08
Bra040022.1-P	Field mustard	plastid	62.45	64.3
CDY22127	Canola	plastid	62.07	63.91
KRH17729	Soybean	plastid	59.77	62.53
HORVU5Hr1G033180.3	Barley	mitochondrion	21.84	21.51
HORVU5Hr1G066350.2	Barley	plastid	19.54	19.81

Protein Annotations

Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	MapMan:50.2.1	UniProt:A0A287UMA6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:HORVU6Hr1G072050	EnsemblPlants:HORVU6Hr1G072050.4	InterPro:IPR001214	InterPro:IPR036464	PFAM:PF00856
PFAM:PF09273	PFscan:PS50280	PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf
InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	UniParc:UPI000B46C94B	SEG:seg

Description

No Description!

Coordinates

chrchr6H:+:500717813..500723844

Molecular Weight (calculated)

58694.2 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.327

Length

522 amino acids

Sequence
(BLAST)

001: PPQPAHNRPH FRGFAMATST TTATALHPQF RPPSHPCAPR RLRPCPSSSS SVRPRFSVRA AAASASASAP VQREAVSGVP WGCEIESLES AASLERWLTA
101: SGLPEQRLAL EKVDIGERGL VALKNVRNGE KLLFVPPTLV ITADSEWTNR EVGDVMKRYS VPDWPLLATY LISEASLEGS SRWSSYIDAL PRQPYSLLYW
201: TRTEIDAYLV ASPIRERAIS RISDVIGTYN DLRDRIFSKH PDLFPEKVYN MENFRWSFGI LFSRLVRLES MGGKVALVPW ADMLNHSPEV DAFLDYDKSS
301: QGIVFTTDRS YQPGEQVFIS YGKKSSGELL LSYGFVPKEG TNPNDSVEFL VSLKKSDECY KEKLQALKKH GLSESESFPL RVTGWPVELM AYAFLVVSPP
401: EMIQRFEEMA VAASNKGSSK PAVNYPELDE QALQFILDCC ESSIKRYTKY LEGAKGSAEV SINTKQANRT LLLKQLARDL CISERRILYR SQYILRRRLR
501: DMRAGGELKA LSLFNGLRNL FK

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.