Factsheet for TraesCS6D01G267500.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07670.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT3G07670.1	TraesCS3D01G106500.1	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G315800.1	Wheat	plastid	97.44	97.63
TraesCS6A01G286800.2	Wheat	plastid	95.67	96.43
HORVU6Hr1G072050.4	Barley	mitochondrion, plastid	95.87	93.3
Zm00001d051668_P001	Maize	plastid	82.48	83.3
EES07338	Sorghum	plastid	81.5	82.97
Os02t0725200-01	Rice	plasma membrane	80.71	81.67
Zm00001d051669_P002	Maize	plastid	75.39	74.95
GSMUA_Achr3P10760_001	Banana	plastid	66.54	67.33
VIT_12s0057g01250.t01	Wine grape	plastid	64.37	65.79
Solyc07g045310.2.1	Tomato	nucleus	64.37	65.27
AT3G07670.1	Thale cress	plastid	64.57	65.08
PGSC0003DMT400044855	Potato	plastid	64.57	65.08
Bra040022.1-P	Field mustard	plastid	64.17	64.3
CDY22127	Canola	plastid	63.78	63.91
KRH17729	Soybean	plastid	61.61	62.73
TraesCS5D01G123700.2	Wheat	plastid	22.64	22.95
TraesCS3D01G544800.2	Wheat	mitochondrion	18.11	20.22
TraesCS5D01G238000.2	Wheat	plastid	19.29	19.8

Protein Annotations

EnsemblPlants:TraesCS6D01G267500.2	EnsemblPlantsGene:TraesCS6D01G267500	Gene3D:3.90.1410.10	Gene3D:3.90.1420.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001214	InterPro:IPR036464	InterPro:Rubisco_LSMT_subst-bd	InterPro:Rubisco_LSMT_subst-bd_sf	InterPro:SET_dom
PANTHER:PTHR13271	PANTHER:PTHR13271:SF81	PFAM:PF00856	PFAM:PF09273	PFscan:PS50280	SEG:seg
SMART:SM00317	SUPFAM:SSF81822	SUPFAM:SSF82199	MapMan:50.2.1	:	:

Description

No Description!

Coordinates

chr6D:+:377543280..377547545

Molecular Weight (calculated)

57093.1 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.290

Length

508 amino acids

Sequence
(BLAST)

001: MATSTTTTTA LHPQFRPPSH PRAPRQLRPF LSSSSSSSSV RPRFSVRAAA ASASAPAQRE AVAGVPWGCE IESLESAASL ERWLTASGLP EQRLALEKVD
101: IGERGLVALK NVRNGEKLLF VPPTLVITAD SEWSNREVGD VMKRYSVPDW PLLATYLISE ASLEGSSRWS SYIDALPRQP YSLLYWTRTE IDAYLAASPI
201: RERAISRISD VIGTYNDLRD RIFSKYPDLF PEKVYTMENF RWSFGILFSR LVRLESMDGK VALVPWADML NHSPEVDAFL DYDKSSQGIV FTTDRSYQPG
301: EQVFISYGKK SSGELLLSYG FVPKEGTNPN DSVEFLVSLN KSDECYKEKL QALKKHGLSE SESFPLRVTG WPVELMAYAF LVVSPPEMIQ CFEEMAVAAS
401: NKGSSKPALN YPELDEEALQ FILDCCESSI KKYTKYLEGA KGSAEVSINT KQANRTLLLK QLARDLCISE RRILYRSQYI LRRRLRDMRA GGELKALSLF
501: TGLRNLFK

Best Arabidopsis Sequence Match ( AT3G07670.1 )
(BLAST)

001: MAKACLLQST LLPAYSPLHK LRNQNITLSF SPLPLSRCRP GIHCSVSAGE TTIQSMEEAP KISWGCEIDS LENATSLQNW LSDSGLPPQK MAIDRVDIGE
101: RGLVASQNLR KGEKLLFVPP SLVISADSEW TNAEAGEVMK RYDVPDWPLL ATYLISEASL QKSSRWFNYI SALPRQPYSL LYWTRTELDM YLEASQIRER
201: AIERITNVVG TYEDLRSRIF SKHPQLFPKE VFNDETFKWS FGILFSRLVR LPSMDGRFAL VPWADMLNHN CEVETFLDYD KSSKGVVFTT DRPYQPGEQV
301: FISYGNKSNG ELLLSYGFVP REGTNPSDSV ELALSLRKND KCYEEKLDAL KKHGLSTPQC FPVRITGWPM ELMAYAYLVV SPPDMRNNFE EMAKAASNKT
401: STKNDLKYPE IEEDALQFIL DSCETSISKY SRFLKESGSM DLDITSPKQL NRKAFLKQLA VDLSTSERRI LYRAQYILRR RLRDIRSGEL KALRLFSGLR
501: NFFK

Arabidopsis Description

Putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Source:UniProtKB/TrEMBL;Acc:Q9S7D2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.