Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G122600.1 | Wheat | plastid | 98.43 | 98.95 |
| TraesCS3D01G106500.1 | Wheat | plastid | 98.43 | 98.95 |
| Zm00001d039455_P002 | Maize | extracellular, mitochondrion | 83.77 | 82.9 |
| EES00126 | Sorghum | plastid | 82.2 | 81.77 |
| Os01t0196500-01 | Rice | plastid | 85.34 | 81.09 |
| HORVU3Hr1G018940.2 | Barley | plastid | 96.34 | 72.16 |
| TraesCS1A01G124100.1 | Wheat | plastid | 71.2 | 71.2 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 64.4 | 65.43 |
| KRH23330 | Soybean | plastid | 53.93 | 55.98 |
| KRH10001 | Soybean | mitochondrion | 53.4 | 55.43 |
| PGSC0003DMT400006409 | Potato | plasma membrane | 49.74 | 52.2 |
| VIT_09s0002g02400.t01 | Wine grape | plastid | 52.36 | 51.81 |
| Solyc03g121460.1.1 | Tomato | plastid | 49.21 | 51.65 |
| KRH47141 | Soybean | plasma membrane | 46.07 | 49.44 |
| KRH44167 | Soybean | plasma membrane | 45.55 | 49.43 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 47.64 | 48.4 |
| CDX97509 | Canola | plasma membrane | 45.55 | 48.07 |
| CDY23634 | Canola | plasma membrane | 45.55 | 48.07 |
| Bra027406.1-P | Field mustard | plasma membrane | 45.03 | 47.51 |
| AT1G55190.1 | Thale cress | plasma membrane | 44.5 | 44.97 |
| CDY51735 | Canola | plasma membrane | 41.36 | 43.41 |
| Bra021504.1-P | Field mustard | endoplasmic reticulum, peroxisome, plasma membrane | 41.36 | 43.41 |
| VIT_11s0016g02330.t01 | Wine grape | plastid | 42.93 | 43.39 |
| AT3G13710.1 | Thale cress | plasma membrane | 42.41 | 43.09 |
| CDY37483 | Canola | plasma membrane | 40.84 | 42.86 |
| Bra014355.1-P | Field mustard | cytosol, plasma membrane, plastid | 41.88 | 42.33 |
| CDY08228 | Canola | plasma membrane | 41.88 | 42.33 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 41.36 | 42.25 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 41.36 | 41.8 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 40.84 | 41.71 |
| Bra037983.1-P | Field mustard | extracellular, plasma membrane | 29.32 | 40.0 |
| Bra031001.1-P | Field mustard | plasma membrane | 37.7 | 39.78 |
| AT1G17700.1 | Thale cress | plasma membrane | 37.17 | 39.44 |
| CDX81845 | Canola | plasma membrane | 37.17 | 39.23 |
| CDY26225 | Canola | plasma membrane | 36.65 | 38.04 |
| Bra025954.1-P | Field mustard | plasma membrane | 36.13 | 37.5 |
| CDY59501 | Canola | plasma membrane | 34.55 | 35.87 |
| KRH49060 | Soybean | plasma membrane | 36.65 | 35.35 |
| KRH74153 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 36.65 | 35.0 |
| CDY06788 | Canola | plastid | 35.08 | 34.54 |
| TraesCS5A01G443300.1 | Wheat | plastid | 40.84 | 33.48 |
| AT4G29658.2 | Thale cress | plastid | 32.98 | 33.16 |
| Bra011125.1-P | Field mustard | mitochondrion | 29.84 | 32.57 |
| CDY43514 | Canola | mitochondrion | 29.32 | 32.0 |
| TraesCS3A01G348100.1 | Wheat | plastid | 35.08 | 31.6 |
| CDY37482 | Canola | plastid | 34.03 | 31.1 |
| CDY51734 | Canola | plastid | 33.51 | 30.62 |
| Bra021503.1-P | Field mustard | plastid | 32.98 | 30.29 |
| TraesCS5A01G381200.1 | Wheat | plastid | 36.65 | 27.34 |
| TraesCS4A01G180500.1 | Wheat | plastid | 32.46 | 27.19 |
| CDY55133 | Canola | plasma membrane | 28.8 | 25.82 |
| TraesCS1A01G297900.1 | Wheat | plastid | 29.84 | 25.79 |
| Bra021502.1-P | Field mustard | plastid | 28.8 | 25.7 |
| CDY51733 | Canola | plastid | 28.8 | 25.7 |
| TraesCS5A01G151600.1 | Wheat | plastid | 28.8 | 24.34 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G104300.1 | EnsemblPlantsGene:TraesCS3A01G104300 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF10 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:67383045..67384053
Molecular Weight (calculated)
20374.3 Da
IEP (calculated)
7.767
GRAVY (calculated)
0.824
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKYGTIPTS SSSAAAGAPH LGGASPLDFI SRAKARGATA LATRRPWREL ADVHAIGLPP SLGDAYLRVR ANLAHFAMNY AIVVLVVVFL SLLWQPISLI
101: VFLVCMVGWL VLYFLHDEPI VLFGRVVGDG VVLAVLAAVT LILLLLTGAT TNILTSLLIG FVLVVVHAAL HKAEDNVDEE VGRWYAPVPA Q
101: VFLVCMVGWL VLYFLHDEPI VLFGRVVGDG VVLAVLAAVT LILLLLTGAT TNILTSLLIG FVLVVVHAAL HKAEDNVDEE VGRWYAPVPA Q
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.