Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G101300.1 | Wheat | golgi | 99.48 | 99.48 |
| TraesCS5A01G089200.1 | Wheat | golgi | 98.96 | 98.96 |
| Os12t0560300-01 | Rice | plasma membrane | 96.89 | 96.89 |
| KXG23692 | Sorghum | endoplasmic reticulum, extracellular | 96.37 | 96.37 |
| Bra000895.1-P | Field mustard | endoplasmic reticulum, extracellular | 94.3 | 94.3 |
| CDY22027 | Canola | endoplasmic reticulum, extracellular | 94.3 | 94.3 |
| CDX90955 | Canola | endoplasmic reticulum, extracellular | 94.3 | 94.3 |
| TraesCS3B01G221700.1 | Wheat | endoplasmic reticulum, extracellular | 93.78 | 93.78 |
| TraesCS3B01G203800.1 | Wheat | endoplasmic reticulum | 93.78 | 93.78 |
| AT4G02080.1 | Thale cress | endoplasmic reticulum | 93.78 | 93.78 |
| CDX91807 | Canola | endoplasmic reticulum, extracellular | 93.78 | 93.78 |
| Solyc01g100350.2.1 | Tomato | plastid | 93.26 | 93.26 |
| PGSC0003DMT400007183 | Potato | endoplasmic reticulum, golgi | 93.26 | 93.26 |
| PGSC0003DMT400023327 | Potato | endoplasmic reticulum, extracellular | 92.75 | 92.75 |
| VIT_05s0077g01230.t01 | Wine grape | endoplasmic reticulum, extracellular | 92.75 | 92.75 |
| Solyc01g079540.2.1 | Tomato | plastid | 92.75 | 92.75 |
| VIT_07s0005g01330.t01 | Wine grape | endoplasmic reticulum, extracellular | 92.23 | 92.23 |
| KRH68446 | Soybean | endoplasmic reticulum | 92.23 | 92.23 |
| AT3G62560.1 | Thale cress | endoplasmic reticulum | 92.23 | 92.23 |
| KRH50760 | Soybean | endoplasmic reticulum | 91.71 | 91.71 |
| Solyc06g009660.2.1 | Tomato | extracellular | 91.71 | 91.71 |
| AT1G56330.1 | Thale cress | endoplasmic reticulum | 91.71 | 91.71 |
| PGSC0003DMT400018800 | Potato | cytosol | 91.71 | 91.71 |
| KRH33832 | Soybean | endoplasmic reticulum | 91.71 | 91.71 |
| KRG96730 | Soybean | endoplasmic reticulum | 91.71 | 91.71 |
| KRG92955 | Soybean | endoplasmic reticulum, extracellular | 91.71 | 91.71 |
| KRH02328 | Soybean | endoplasmic reticulum | 91.71 | 91.71 |
| CDY65544 | Canola | endoplasmic reticulum, extracellular | 90.16 | 91.1 |
| KRH50759 | Soybean | endoplasmic reticulum | 90.67 | 90.67 |
| CDY41713 | Canola | endoplasmic reticulum, extracellular | 91.19 | 90.26 |
| Bra027937.1-P | Field mustard | endoplasmic reticulum, extracellular | 91.19 | 90.26 |
| CDY59269 | Canola | endoplasmic reticulum, extracellular | 91.19 | 90.26 |
| CDX95000 | Canola | endoplasmic reticulum, golgi | 90.16 | 90.16 |
| Bra018576.1-P | Field mustard | endoplasmic reticulum, golgi | 90.16 | 90.16 |
| CDX93520 | Canola | endoplasmic reticulum, golgi | 90.16 | 90.16 |
| CDY31105 | Canola | endoplasmic reticulum, golgi | 90.16 | 90.16 |
| KRH37008 | Soybean | endoplasmic reticulum | 90.16 | 90.16 |
| KRH11980 | Soybean | endoplasmic reticulum, extracellular | 90.16 | 90.16 |
| KRH02329 | Soybean | endoplasmic reticulum, extracellular | 90.16 | 90.16 |
| Bra038169.1-P | Field mustard | endoplasmic reticulum, extracellular | 90.67 | 89.74 |
| CDY39001 | Canola | endoplasmic reticulum, extracellular | 90.67 | 89.74 |
| CDY32159 | Canola | endoplasmic reticulum, golgi | 89.64 | 89.64 |
| PGSC0003DMT400068658 | Potato | endoplasmic reticulum, extracellular | 88.08 | 88.08 |
| Solyc01g060130.2.1 | Tomato | endoplasmic reticulum, extracellular | 87.56 | 87.56 |
| AT1G09180.1 | Thale cress | extracellular | 86.53 | 86.53 |
| VIT_16s0013g00170.t01 | Wine grape | cytosol | 46.63 | 83.33 |
| AT1G02620.1 | Thale cress | endoplasmic reticulum | 50.78 | 80.33 |
| TraesCS7B01G236300.1 | Wheat | cytosol | 78.24 | 78.24 |
| VIT_05s0165g00230.t01 | Wine grape | cytosol | 66.84 | 75.88 |
| VIT_14s0060g01340.t01 | Wine grape | endoplasmic reticulum, extracellular | 81.35 | 66.24 |
| VIT_02s0033g01130.t01 | Wine grape | cytosol | 44.04 | 47.75 |
| Bra036294.1-P | Field mustard | endoplasmic reticulum | 93.78 | 44.36 |
| CDY07095 | Canola | endoplasmic reticulum | 93.78 | 44.25 |
| TraesCS4B01G260300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.61 | 33.15 |
| TraesCS6B01G324400.2 | Wheat | cytosol | 30.57 | 32.07 |
Protein Annotations
| MapMan:22.4.2.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| InterPro:IPR006687 | InterPro:P-loop_NTPase | PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51422 | PANTHER:PTHR11711 |
| PANTHER:PTHR11711:SF165 | SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase_ARF/SAR |
| InterPro:Small_GTPase_SAR1 | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS5B01G095200 | EnsemblPlants:TraesCS5B01G095200.1 | TIGR:cd00879 | SEG:seg |
Description
No Description!
Coordinates
chr5B:+:125228328..125232233
Molecular Weight (calculated)
22081.8 Da
IEP (calculated)
8.367
GRAVY (calculated)
-0.167
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLVDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDDSLA TVPFLILGNK IDIPYAASEE ELRYRMGLSN FTTGKGKVSL SESNVRPLEV FMCSIVRKMG YGEGFKWMSQ YIK
101: ERFAESKKEL DALLSDDSLA TVPFLILGNK IDIPYAASEE ELRYRMGLSN FTTGKGKVSL SESNVRPLEV FMCSIVRKMG YGEGFKWMSQ YIK
001: MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKREL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKGKVTL GDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIN
101: ERFAESKREL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKGKVTL GDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIN
Arabidopsis Description
SAR1BSAR1B [Source:UniProtKB/TrEMBL;Acc:A0A178WM97]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.