Factsheet for Solyc06g009660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 5
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	cytosol, endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018800	Potato	cytosol	100.0	100.0
Solyc01g079540.2.1	Tomato	plastid	97.93	97.93
VIT_07s0005g01330.t01	Wine grape	endoplasmic reticulum, extracellular	95.34	95.34
Solyc01g100350.2.1	Tomato	plastid	94.3	94.3
EES00709	Sorghum	endoplasmic reticulum, extracellular	93.78	93.78
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	93.78	93.78
TraesCS3B01G221700.1	Wheat	endoplasmic reticulum, extracellular	93.26	93.26
TraesCS3A01G193800.1	Wheat	golgi	93.26	93.26
TraesCS3D01G196200.1	Wheat	endoplasmic reticulum, extracellular	92.75	92.75
TraesCS5A01G089200.1	Wheat	golgi	92.75	92.75
Os01t0338000-01	Rice	plasma membrane	92.75	92.75
KXG23692	Sorghum	endoplasmic reticulum, extracellular	92.75	92.75
Os12t0560300-01	Rice	plasma membrane	92.23	92.23
TraesCS5D01G101300.1	Wheat	golgi	92.23	92.23
TraesCS5B01G095200.1	Wheat	endoplasmic reticulum, extracellular	91.71	91.71
Os01t0254000-01	Rice	plasma membrane	91.19	91.19
KRH50760	Soybean	endoplasmic reticulum	90.67	90.67
Zm00001d040278_P001	Maize	extracellular	90.16	90.16
EES02699	Sorghum	endoplasmic reticulum, extracellular	90.16	90.16
KRH02328	Soybean	endoplasmic reticulum	90.16	90.16
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	89.12	89.12
HORVU3Hr1G035000.2	Barley	plasma membrane	89.12	89.12
TraesCS3A01G172900.1	Wheat	golgi	89.12	89.12
TraesCS3B01G203800.1	Wheat	endoplasmic reticulum	89.12	89.12
TraesCS3D01G179300.1	Wheat	endoplasmic reticulum, extracellular	89.12	85.57
EES15193	Sorghum	endoplasmic reticulum	80.31	79.49
KXG28257	Sorghum	endoplasmic reticulum	79.79	79.38
Zm00001d049068_P001	Maize	cytosol	79.27	78.87
Os06t0225000-00	Rice	endoplasmic reticulum	79.27	78.87
TraesCS7B01G236300.1	Wheat	cytosol	78.24	78.24
TraesCS7D01G332100.1	Wheat	endoplasmic reticulum	77.72	77.72
HORVU7Hr1G080190.1	Barley	endoplasmic reticulum	77.72	77.72
HORVU3Hr1G045150.3	Barley	plastid	77.72	67.26
Zm00001d009211_P001	Maize	mitochondrion	93.78	55.35
VIT_02s0033g01130.t01	Wine grape	cytosol	45.6	49.44
Solyc03g043960.2.1	Tomato	plastid	31.61	33.15
Solyc02g064640.2.1	Tomato	extracellular	31.61	33.15
Solyc02g092330.2.1	Tomato	plastid	31.09	32.61
Solyc11g011040.1.1	Tomato	plasma membrane	30.57	32.07

Protein Annotations

MapMan:22.4.2.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016192	InterPro:IPR006687
UniProt:K4C3Z6	InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51422	PANTHER:PTHR11711
PANTHER:PTHR11711:SF165	SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF/SAR
InterPro:Small_GTPase_SAR1	EnsemblPlantsGene:Solyc06g009660.2	EnsemblPlants:Solyc06g009660.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002766EC4	SEG:seg

Description

No Description!

Coordinates

chr6:+:3608115..3612636

Molecular Weight (calculated)

21978.6 Da

IEP (calculated)

7.648

GRAVY (calculated)

-0.127

Length

193 amino acids

Sequence
(BLAST)

001: MFLWDWFYGV LSSLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTG VTTGKGKVNL ADSTVRPLEV FMCSIVRKMG YGDGFKWVSQ YIK

Best Arabidopsis Sequence Match ( AT4G02080.1 )
(BLAST)

001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK

Arabidopsis Description

SAR1ASAR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5S8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.