Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 6
- cytosol 3
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG28257 | Sorghum | endoplasmic reticulum | 82.99 | 82.99 |
| EES15193 | Sorghum | endoplasmic reticulum | 82.99 | 82.56 |
| Zm00001d049068_P001 | Maize | cytosol | 79.9 | 79.9 |
| PGSC0003DMT400023327 | Potato | endoplasmic reticulum, extracellular | 79.38 | 79.79 |
| Os01t0254000-01 | Rice | plasma membrane | 79.38 | 79.79 |
| VIT_07s0005g01330.t01 | Wine grape | endoplasmic reticulum, extracellular | 79.38 | 79.79 |
| Solyc06g009660.2.1 | Tomato | extracellular | 78.87 | 79.27 |
| Solyc01g079540.2.1 | Tomato | plastid | 78.87 | 79.27 |
| PGSC0003DMT400068658 | Potato | endoplasmic reticulum, extracellular | 78.87 | 79.27 |
| PGSC0003DMT400018800 | Potato | cytosol | 78.87 | 79.27 |
| KRG96730 | Soybean | endoplasmic reticulum | 78.35 | 78.76 |
| Solyc01g060130.2.1 | Tomato | endoplasmic reticulum, extracellular | 78.35 | 78.76 |
| Os01t0338000-01 | Rice | plasma membrane | 78.35 | 78.76 |
| AT3G62560.1 | Thale cress | endoplasmic reticulum | 78.35 | 78.76 |
| Solyc01g100350.2.1 | Tomato | plastid | 77.84 | 78.24 |
| PGSC0003DMT400007183 | Potato | endoplasmic reticulum, golgi | 77.84 | 78.24 |
| KRH68446 | Soybean | endoplasmic reticulum | 77.84 | 78.24 |
| CDY65544 | Canola | endoplasmic reticulum, extracellular | 76.8 | 78.01 |
| KRG92955 | Soybean | endoplasmic reticulum, extracellular | 77.32 | 77.72 |
| VIT_05s0077g01230.t01 | Wine grape | endoplasmic reticulum, extracellular | 77.32 | 77.72 |
| AT1G56330.1 | Thale cress | endoplasmic reticulum | 77.32 | 77.72 |
| KRH50759 | Soybean | endoplasmic reticulum | 76.8 | 77.2 |
| AT1G09180.1 | Thale cress | extracellular | 76.8 | 77.2 |
| KRH33832 | Soybean | endoplasmic reticulum | 76.8 | 77.2 |
| TraesCS7B01G236300.1 | Wheat | cytosol | 76.8 | 77.2 |
| TraesCS7D01G332100.1 | Wheat | endoplasmic reticulum | 76.8 | 77.2 |
| AT4G02080.1 | Thale cress | endoplasmic reticulum | 76.8 | 77.2 |
| CDY22027 | Canola | endoplasmic reticulum, extracellular | 76.8 | 77.2 |
| Bra000895.1-P | Field mustard | endoplasmic reticulum, extracellular | 76.8 | 77.2 |
| CDX90955 | Canola | endoplasmic reticulum, extracellular | 76.8 | 77.2 |
| Bra018576.1-P | Field mustard | endoplasmic reticulum, golgi | 76.29 | 76.68 |
| CDX93520 | Canola | endoplasmic reticulum, golgi | 76.29 | 76.68 |
| CDX95000 | Canola | endoplasmic reticulum, golgi | 76.29 | 76.68 |
| Os12t0560300-01 | Rice | plasma membrane | 76.29 | 76.68 |
| CDX91807 | Canola | endoplasmic reticulum, extracellular | 76.29 | 76.68 |
| CDY31105 | Canola | endoplasmic reticulum, golgi | 76.29 | 76.68 |
| KRH37008 | Soybean | endoplasmic reticulum | 76.29 | 76.68 |
| KRH11980 | Soybean | endoplasmic reticulum, extracellular | 76.29 | 76.68 |
| KRH02329 | Soybean | endoplasmic reticulum, extracellular | 76.29 | 76.68 |
| Bra038169.1-P | Field mustard | endoplasmic reticulum, extracellular | 76.8 | 76.41 |
| CDY39001 | Canola | endoplasmic reticulum, extracellular | 76.8 | 76.41 |
| CDY41713 | Canola | endoplasmic reticulum, extracellular | 76.8 | 76.41 |
| CDY59269 | Canola | endoplasmic reticulum, extracellular | 76.8 | 76.41 |
| Bra027937.1-P | Field mustard | endoplasmic reticulum, extracellular | 76.8 | 76.41 |
| HORVU7Hr1G080190.1 | Barley | endoplasmic reticulum | 75.77 | 76.17 |
| CDY32159 | Canola | endoplasmic reticulum, golgi | 75.77 | 76.17 |
| KRH50760 | Soybean | endoplasmic reticulum | 75.26 | 75.65 |
| KRH02328 | Soybean | endoplasmic reticulum | 75.26 | 75.65 |
| GSMUA_Achr9P21350_001 | Banana | endoplasmic reticulum, extracellular | 73.2 | 73.58 |
| VIT_16s0013g00170.t01 | Wine grape | cytosol | 40.72 | 73.15 |
| AT1G02620.1 | Thale cress | endoplasmic reticulum | 41.24 | 65.57 |
| VIT_05s0165g00230.t01 | Wine grape | cytosol | 57.22 | 65.29 |
| VIT_14s0060g01340.t01 | Wine grape | endoplasmic reticulum, extracellular | 69.07 | 56.54 |
| VIT_02s0033g01130.t01 | Wine grape | cytosol | 35.57 | 38.76 |
| Bra036294.1-P | Field mustard | endoplasmic reticulum | 76.29 | 36.27 |
| CDY07095 | Canola | endoplasmic reticulum | 76.29 | 36.19 |
| Os03t0200800-01 | Rice | plasma membrane | 34.02 | 35.87 |
| Os02t0732500-01 | Rice | plasma membrane | 34.02 | 35.87 |
Protein Annotations
| MapMan:22.4.2.1 | Gene3D:3.40.50.300 | EntrezGene:4340541 | ProteinID:BAD37285.1 | ProteinID:BAD38197.1 | ProteinID:BAF19107.1 |
| ProteinID:BAS96858.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005794 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016192 | InterPro:IPR006687 | EnsemblPlantsGene:Os06g0225000 |
| EnsemblPlants:Os06t0225000-00 | InterPro:P-loop_NTPase | PFAM:PF00025 | PRINTS:PR00328 | PFscan:PS51422 | PANTHER:PTHR11711 |
| PANTHER:PTHR11711:SF302 | UniProt:Q67UH2 | SMART:SM00177 | SMART:SM00178 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase_ARF/SAR | InterPro:Small_GTPase_SAR1 | TIGRFAMs:TIGR00231 | UniParc:UPI0000426229 | RefSeq:XP_015641255.1 | SEG:seg |
Description
SAR1B-like gene, secretion-associated Ras-superfamily protein 1, ARF-like protein 1cSimilar to NTGB3 (Fragment). (Os06t0225000-00)
Coordinates
chr6:+:6475161..6479028
Molecular Weight (calculated)
21876.5 Da
IEP (calculated)
6.261
GRAVY (calculated)
0.056
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFLLDWFYD VLASIGLWQK EAKILFLGLD NAGKTTLFYM LSQENLAVHQ PTQHPTSEEL SIGRIRFKAF DLGGHRIARR VWRDYYAQVD AVVYVVDAAD
101: RCRFAESKME LDALLSDDAL AGVPFLVLGN KIDIPYAVPE QELCYYLGLT GLTTGKGNVN LAGTGVRPVE VFMCSVVRRM GYGDGFRWMS QYIK
101: RCRFAESKME LDALLSDDAL AGVPFLVLGN KIDIPYAVPE QELCYYLGLT GLTTGKGNVN LAGTGVRPVE VFMCSVVRRM GYGDGFRWMS QYIK
001: MFLVDWFYGV LATLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA NVPFLILGNK IDIPYAASED ELRYHLGLTS FTTGKGKVNL AGTNVRPLEV FMCSIVRKMG YGEGFKWVSQ YID
101: ERFAESKKEL DALLSDESLA NVPFLILGNK IDIPYAASED ELRYHLGLTS FTTGKGKVNL AGTNVRPLEV FMCSIVRKMG YGEGFKWVSQ YID
Arabidopsis Description
Putative Sar1 GTP binding protein [Source:UniProtKB/TrEMBL;Acc:Q8VYP7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.