CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

cytosol 2
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78795
CDX80758
CDX88803
CDX90453
CDX90455
CDX92368
CDX97509
CDY01473
CDY01476
CDY01477
CDY05723
CDY09128
CDY17034
CDY23634
CDY23649
CDY30955
CDY31990
CDY35676
CDY37482
CDY37483
CDY44837
CDY47592
CDY51733
CDY51734
CDY51735
CDY55133
CDY60787
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56330.1	CDY17034	AT1G47260.1	21798944
AT1G56330.1	CDY23649	AT1G47260.1	21798944
AT1G56330.1	CDY47592	AT1G47260.1	21798944
AT1G56330.1	CDY67628	AT1G47260.1	21798944
AT1G56330.1	CDY05723	AT2G20130.1	21798944
AT1G56330.1	CDY31990	AT2G20130.1	21798944
AT1G56330.1	CDX97509	AT3G13710.1	21798944
AT1G56330.1	CDY23634	AT3G13710.1	21798944
AT1G56330.1	CDY37483	AT3G13710.1	21798944
AT1G56330.1	CDY51735	AT3G13710.1	21798944
AT1G56330.1	CDY37482	AT3G13720.1	21798944
AT1G56330.1	CDY51733	AT3G13720.1	21798944
AT1G56330.1	CDY51734	AT3G13720.1	21798944
AT1G56330.1	CDY55133	AT3G13720.1	21798944
AT1G56330.1	CDY30955	AT3G43230.1	21798944
AT1G56330.1	CDY44837	AT3G43230.1	21798944
AT1G56330.1	CDX78795	AT4G17720.1	21798944
AT1G56330.1	CDX90453	AT4G17720.1	21798944
AT1G56330.1	CDX90455	AT4G17720.1	21798944
AT1G56330.1	CDY01473	AT4G17720.1	21798944
AT1G56330.1	CDY01476	AT4G17720.1	21798944
AT1G56330.1	CDY01477	AT4G17720.1	21798944
AT1G56330.1	CDY60787	AT4G17720.1	21798944
AT1G56330.1	CDX80758	AT5G01640.1	21798944
AT1G56330.1	CDX70995	AT5G22290.1	21798944
AT1G56330.1	CDX88803	AT5G22290.1	21798944
AT1G56330.1	CDX92368	AT5G22290.1	21798944
AT1G56330.1	CDY09128	AT5G22290.1	21798944
AT1G56330.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038169.1-P	Field mustard	endoplasmic reticulum, extracellular	100.0	97.95
CDY39001	Canola	endoplasmic reticulum, extracellular	100.0	97.95
CDY59269	Canola	endoplasmic reticulum, extracellular	99.48	97.44
CDY41713	Canola	endoplasmic reticulum, extracellular	99.48	97.44
AT1G56330.1	Thale cress	endoplasmic reticulum	98.43	97.41
CDY31105	Canola	endoplasmic reticulum, golgi	94.76	93.78
CDX93520	Canola	endoplasmic reticulum, golgi	94.76	93.78
CDX95000	Canola	endoplasmic reticulum, golgi	94.76	93.78
CDY32159	Canola	endoplasmic reticulum, golgi	94.24	93.26
CDX90955	Canola	endoplasmic reticulum, extracellular	93.72	92.75
CDY22027	Canola	endoplasmic reticulum, extracellular	93.72	92.75
CDX91807	Canola	endoplasmic reticulum, extracellular	93.19	92.23
PGSC0003DMT400007183	Potato	endoplasmic reticulum, golgi	92.15	91.19
Solyc01g100350.2.1	Tomato	plastid	92.15	91.19
TraesCS5A01G089200.1	Wheat	golgi	92.15	91.19
TraesCS5D01G101300.1	Wheat	golgi	91.62	90.67
KRG92955	Soybean	endoplasmic reticulum, extracellular	91.62	90.67
KXG23692	Sorghum	endoplasmic reticulum, extracellular	91.1	90.16
TraesCS3B01G221700.1	Wheat	endoplasmic reticulum, extracellular	91.1	90.16
TraesCS3A01G193800.1	Wheat	golgi	91.1	90.16
KRH33832	Soybean	endoplasmic reticulum	91.1	90.16
KRG96730	Soybean	endoplasmic reticulum	91.1	90.16
TraesCS5B01G095200.1	Wheat	endoplasmic reticulum, extracellular	91.1	90.16
Os01t0338000-01	Rice	plasma membrane	91.1	90.16
Zm00001d040752_P001	Maize	endoplasmic reticulum, extracellular	91.1	90.16
EES00709	Sorghum	endoplasmic reticulum, extracellular	91.1	90.16
Os12t0560300-01	Rice	plasma membrane	91.1	90.16
TraesCS3D01G196200.1	Wheat	endoplasmic reticulum, extracellular	90.58	89.64
KRH68446	Soybean	endoplasmic reticulum	90.58	89.64
Os01t0254000-01	Rice	plasma membrane	89.53	88.6
EES02699	Sorghum	endoplasmic reticulum, extracellular	88.48	87.56
Zm00001d040278_P001	Maize	extracellular	88.48	87.56
PGSC0003DMT400068658	Potato	endoplasmic reticulum, extracellular	87.43	86.53
HORVU3Hr1G035000.2	Barley	plasma membrane	87.43	86.53
TraesCS3A01G172900.1	Wheat	golgi	87.43	86.53
TraesCS3B01G203800.1	Wheat	endoplasmic reticulum	87.43	86.53
Solyc01g060130.2.1	Tomato	endoplasmic reticulum, extracellular	86.91	86.01
VIT_16s0013g00170.t01	Wine grape	cytosol	48.17	85.19
TraesCS3D01G179300.1	Wheat	endoplasmic reticulum, extracellular	87.43	83.08
Zm00001d049068_P001	Maize	cytosol	80.63	79.38
EES15193	Sorghum	endoplasmic reticulum	80.63	78.97
KXG28257	Sorghum	endoplasmic reticulum	80.1	78.87
TraesCS7B01G236300.1	Wheat	cytosol	79.06	78.24
HORVU7Hr1G080190.1	Barley	endoplasmic reticulum	78.53	77.72
TraesCS7D01G332100.1	Wheat	endoplasmic reticulum	78.53	77.72
Os06t0225000-00	Rice	endoplasmic reticulum	78.01	76.8
VIT_14s0060g01340.t01	Wine grape	endoplasmic reticulum, extracellular	82.2	66.24
HORVU3Hr1G045150.3	Barley	plastid	74.87	64.13
Zm00001d009211_P001	Maize	mitochondrion	91.1	53.21
CDY07095	Canola	endoplasmic reticulum	94.24	44.01
CDY08727	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.46	33.7
CDY36501	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.46	33.7
CDY18665	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.41	32.61
CDY23031	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.41	32.61
CDY02106	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.41	32.61
CDX81307	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.41	32.61
CDY43583	Canola	cytosol	12.57	31.58
CDY06369	Canola	cytosol	28.8	30.22
GSMUA_Achr11P...	Banana	mitochondrion, plastid	35.6	27.98
CDY37846	Canola	cytosol, mitochondrion, nucleus, plastid	17.28	25.78
CDX68554	Canola	cytosol	17.28	25.58
CDY01716	Canola	cytosol	28.8	24.44
CDY01715	Canola	cytosol	28.8	24.44
CDX74569	Canola	cytosol	28.8	24.34
CDY22028	Canola	nucleus	17.8	16.59

Protein Annotations

MapMan:22.4.2.1	Gene3D:3.40.50.300	GO:A0A078JFR5	UniProt:A0A078JFR5	EnsemblPlants:CDY65544	ProteinID:CDY65544
ProteinID:CDY65544.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00046782001	InterPro:IPR006687
InterPro:P-loop_NTPase	PFAM:PF00025	PRINTS:PR00328	PFscan:PS51422	PANTHER:PTHR11711	PANTHER:PTHR11711:SF165
SMART:SM00177	SMART:SM00178	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase_ARF/SAR	InterPro:Small_GTPase_SAR1
TIGRFAMs:TIGR00231	UniParc:UPI0003E69303	SEG:seg	:	:	:

Description

BnaAnng20600DBnaAnng20600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFR5]

Coordinates

chrLK034831:-:5471..6552

Molecular Weight (calculated)

21803.4 Da

IEP (calculated)

7.704

GRAVY (calculated)

-0.129

Length

191 amino acids

Sequence
(BLAST)

001: MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFSESKREL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKGKVTT AGVRPLEVFM CSIVRKMGYG EGFKWLSQYI N

Best Arabidopsis Sequence Match ( AT1G56330.1 )
(BLAST)

001: MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKREL DALLSDEALA TVPFLILGNK IDIPYAASED ELRYHLGLTN FTTGKGKVTL GDSGVRPLEV FMCSIVRKMG YGEGFKWLSQ YIN

Arabidopsis Description

SAR1BSAR1B [Source:UniProtKB/TrEMBL;Acc:A0A178WM97]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.