CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68969
CDX72438
CDX75346
CDX97509
CDY17034
CDY23634
CDY23649
CDY28332
CDY37483
CDY47592
CDY49385
CDY51735
CDY51944
CDY67628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43230.1	CDY17034	AT1G47260.1	21798944
AT3G43230.1	CDY23649	AT1G47260.1	21798944
AT3G43230.1	CDY47592	AT1G47260.1	21798944
AT3G43230.1	CDY67628	AT1G47260.1	21798944
AT3G43230.1	CDX97509	AT3G13710.1	21798944
AT3G43230.1	CDY23634	AT3G13710.1	21798944
AT3G43230.1	CDY37483	AT3G13710.1	21798944
AT3G43230.1	CDY51735	AT3G13710.1	21798944
AT3G43230.1	CDX68969	AT4G33350.1	21798944
AT3G43230.1	CDX75346	AT4G33350.1	21798944
AT3G43230.1	CDX72438	AT4G33920.1	21798944
AT3G43230.1	CDY28332	AT4G33920.1	21798944
AT3G43230.1	CDY49385	AT4G33920.1	21798944
AT3G43230.1	CDY51944	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30955	Canola	cytosol	71.74	75.13
GSMUA_Achr1P21800_001	Banana	extracellular, golgi, plastid	12.37	74.75
Bra019445.1-P	Field mustard	cytosol	77.09	72.03
AT3G43230.1	Thale cress	cytosol	55.52	68.45
GSMUA_AchrUn_...	Banana	cytosol, extracellular	8.53	67.11
GSMUA_Achr3P10170_001	Banana	mitochondrion	46.49	65.88
GSMUA_AchrUn_...	Banana	extracellular	8.03	64.0
VIT_11s0016g00400.t01	Wine grape	cytosol	50.17	63.16
KRH19396	Soybean	cytosol	49.83	61.57
KRH02544	Soybean	cytosol	49.67	61.36
Solyc07g017500.2.1	Tomato	cytosol	49.16	60.62
Os07t0616900-01	Rice	cytosol	46.15	59.74
TraesCS2A01G168100.1	Wheat	cytosol	45.99	59.65
TraesCS2B01G194100.1	Wheat	cytosol	45.65	59.22
TraesCS2D01G175500.1	Wheat	cytosol	45.65	59.22
HORVU2Hr1G030860.2	Barley	cytosol	45.32	58.79
Zm00001d022148_P001	Maize	cytosol	44.65	57.79
GSMUA_Achr8P30460_001	Banana	cytosol	45.48	57.75
OQU90261	Sorghum	cytosol	44.48	57.7
EER96209	Sorghum	cytosol	46.66	56.25
TraesCS3D01G091300.1	Wheat	cytosol	45.99	55.44
Zm00001d019348_P001	Maize	cytosol	45.99	55.44
HORVU3Hr1G016350.1	Barley	cytosol	45.15	54.77
PGSC0003DMT400041172	Potato	cytosol	4.85	54.72
TraesCS3B01G106600.1	Wheat	cytosol	45.32	54.64
TraesCS3A01G091400.1	Wheat	cytosol	44.98	54.45
Os07t0272400-01	Rice	cytosol	45.15	54.33
OQU77712	Sorghum	cytosol	28.93	53.73
CDX99856	Canola	cytosol	34.28	32.39
CDY26313	Canola	cytosol	34.11	32.28

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078I442	UniProt:A0A078I442	EnsemblPlants:CDY44837	ProteinID:CDY44837
ProteinID:CDY44837.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00080872001	InterPro:IPR013083
InterPro:IPR017455	PFAM:PF01363	PFAM:PF04366	PFscan:PS50178	PANTHER:PTHR15629	PANTHER:PTHR15629:SF25
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI0004EEC5F3	InterPro:Ysc84_actin-binding	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaCnng11930DBnaCnng11930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I442]

Coordinates

chrLK032603:+:35706..42831

Molecular Weight (calculated)

65401.6 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.257

Length

598 amino acids

Sequence
(BLAST)

001: MNEQRICSFD GVTSADASSG EEVVIGRLTI QKLRAELEVT RIRDRERVVE LEATNKKLRM TKFGFVHMAS LNGKMKFKYE DDDDDDDGYG DSSSLESIPT
101: KIEANYPIID DSEEDYVDEG FDSAEPKQGK VDVNLKNVLT GLIAIVTGSN KGLDDQKPPS SSSSNQNVSF LGSSVYIPSA PPLLEPNYSV YKDLLEAEPP
201: HWLPDSSTTT CMHCSSPFTA ITCGRHHCRF CGGIFCRNCS RGRCLMPTRF RERNPQRVCD SCYERLDPLQ GVLINSISNA VQVAKHDVVD WTCTRGWLNL
301: PIGLSMEDEI YKASNTLRGY SQVARSDPEK SIPHALLSRA QGLAILTVAK AGAFLSYNLG TGLVISRRSD GSWSAPSALL SLGLGWGAQV GGELMDFIIV
401: LHDLKAVKTF CSRMHFSLGA GCSAAAGPIG RVLEADLRAG DRGSGLCYTY SRCKGAFVGL SLEGNVVTTR RDTNVKFYGD PYLSTSDILL GMVDQPRAAQ
501: PLYTALKDLY AGAKARPSVT SELSPFSTVH PVPCRATAST TFLMYLRHKG LGNDSEDLRS DFNDNMSESS LSKFLFGGQV CGCFSFRRLI NNVMSHKS

Best Arabidopsis Sequence Match ( AT3G43230.1 )
(BLAST)

001: MATLNGKASP YSEENIKFKY DDYDDDDDDD DGSGSGSGGG YEDGPKWSVQ SIPTKKEVEY PIIDSGDYVD DGYDSSGELS TTTTPPIQGN EKPEVNLKNV
101: LTGLIAIVTG RNKNPLDQKN PSSNVSFLGS GTNGDTFVHS SVYIPSAPPL LEPSGINYSV YKELLEAEPP EWLPDSLAST CMQCSTPFTA ITCGRHHCRF
201: CGGIFCRNCS KGRCLMPSRF RERNPQRVCD SCYERLDPLQ CVLINSISNA VQVAKHDVVD WTCSRGWLNL PVGLSMEDEI YKAANTLRGY CQVARLDPEK
301: SIPHAVLSRA KGLAIITVAK AGALLSYKLG TGLVISRRPD GSWSAPSAIL SVGLGWGAQI GGELMDFIIV LHDVKAVKTF CSRMHFSLGA GCSAAAGPIG
401: RVLEADLRAG DKGSGVCYTY SRSKGAFVGV SLEGNLVATR RDMNVKFYGD PYLSTSDILL GMVDQPKAAE PLYTALRELY ARLRP

Arabidopsis Description

RING/FYVE/PHD-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.