Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75346 | Canola | plastid | 72.12 | 88.81 |
| Bra011434.1-P | Field mustard | plastid | 71.21 | 88.35 |
| AT4G33350.1 | Thale cress | plastid | 63.33 | 77.99 |
| KRG99384 | Soybean | plastid | 31.52 | 66.67 |
| KRH51981 | Soybean | plastid | 50.61 | 64.23 |
| KRH61282 | Soybean | nucleus | 50.0 | 63.95 |
| VIT_18s0001g10590.t01 | Wine grape | plastid | 51.52 | 61.37 |
| Solyc04g079000.2.1 | Tomato | plastid | 48.79 | 54.95 |
| PGSC0003DMT400020682 | Potato | plastid | 47.88 | 53.92 |
| TraesCS7B01G076600.1 | Wheat | plastid | 42.73 | 52.42 |
| TraesCS7D01G172300.1 | Wheat | plastid | 42.73 | 52.03 |
| GSMUA_Achr6P30510_001 | Banana | plastid | 46.06 | 51.88 |
| TraesCS7A01G171800.1 | Wheat | plastid | 42.73 | 51.84 |
| Os06t0213200-01 | Rice | cytosol, mitochondrion | 9.09 | 51.72 |
| Zm00001d044931_P001 | Maize | plastid | 42.12 | 49.64 |
| EER89408 | Sorghum | plastid | 42.12 | 49.12 |
| GSMUA_Achr9P27070_001 | Banana | plastid | 20.0 | 48.53 |
| HORVU7Hr1G035680.1 | Barley | cytosol | 38.18 | 45.32 |
| CDY18095 | Canola | plastid | 25.76 | 27.69 |
| CDY66637 | Canola | nucleus, plastid | 26.06 | 27.22 |
Protein Annotations
| EnsemblPlants:CDX68969 | EnsemblPlantsGene:GSBRNA2T00130717001 | Gene3D:3.40.1350.100 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Tic22-like | PANTHER:PTHR33926 | PANTHER:PTHR33926:SF2 | PFAM:PF04278 | ProteinID:CDX68969 | ProteinID:CDX68969.1 |
| SEG:seg | UniParc:UPI0004EE9105 | MapMan:23.1.3.6 | : | : | : |
Description
BnaC01g04840D
Coordinates
chrLK031789:-:2244649..2247059
Molecular Weight (calculated)
37761.3 Da
IEP (calculated)
9.846
GRAVY (calculated)
-0.377
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSSVKTNP FLSFLHHHCN RFASDLSSRF EDTKRLAEAL TNRRFSPLSP PFASVSQSSK PSSTTTLNPS HVAKALAGTS VFTVSNTNNE FVLISDPTGD
101: KSIGLLCFRQ EDAEAFLAQA RLRRRELKTN AKVVPINLDQ VYLLKVEGIS FRFLPDPIQI KNALELKSSS ASKNGFDGVP VFQSELLVVR KKNKRYCPVY
201: FSKEDLEREL SKYTRASRGE QQIMVMIPIR LVFEGPFFRA STARERGNYR YHTLYIDQYY KEVPQHWYVE SLLIFTMKLI NLALSQVGSL EDVLRKMERS
301: EKNSGWEDVI FIPPGRSYAQ HMQEVIKDIK
101: KSIGLLCFRQ EDAEAFLAQA RLRRRELKTN AKVVPINLDQ VYLLKVEGIS FRFLPDPIQI KNALELKSSS ASKNGFDGVP VFQSELLVVR KKNKRYCPVY
201: FSKEDLEREL SKYTRASRGE QQIMVMIPIR LVFEGPFFRA STARERGNYR YHTLYIDQYY KEVPQHWYVE SLLIFTMKLI NLALSQVGSL EDVLRKMERS
301: EKNSGWEDVI FIPPGRSYAQ HMQEVIKDIK
001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE
Arabidopsis Description
TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.