Factsheet for Zm00001d044931_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009715_P001
Zm00001d038607_P001
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	Zm00001d009715_P001	AT3G24140.1	21798944
AT4G33350.1	Zm00001d038607_P001	AT3G59840.1	21798944
AT4G33350.1	Zm00001d045580_P001	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0213200-01	Rice	cytosol, mitochondrion	18.93	91.38
EER89408	Sorghum	plastid	86.43	85.51
TraesCS7B01G076600.1	Wheat	plastid	78.57	81.78
TraesCS7D01G172300.1	Wheat	plastid	78.93	81.55
TraesCS7A01G171800.1	Wheat	plastid	78.93	81.25
HORVU7Hr1G035680.1	Barley	cytosol	64.64	65.11
GSMUA_Achr9P27070_001	Banana	plastid	29.29	60.29
GSMUA_Achr6P30510_001	Banana	plastid	62.86	60.07
KRG99384	Soybean	plastid	32.86	58.97
KRH61282	Soybean	nucleus	51.43	55.81
KRH51981	Soybean	plastid	51.43	55.38
CDX75346	Canola	plastid	50.36	52.61
AT4G33350.1	Thale cress	plastid	50.0	52.24
VIT_18s0001g10590.t01	Wine grape	plastid	51.43	51.99
Bra011434.1-P	Field mustard	plastid	49.29	51.88
PGSC0003DMT400020682	Potato	plastid	52.86	50.51
Solyc04g079000.2.1	Tomato	plastid	52.14	49.83
CDX68969	Canola	plastid	49.64	42.12
Zm00001d019404_P001	Maize	plastid	34.29	33.68

Protein Annotations

MapMan:23.1.3.6	Gene3D:3.40.1350.100	ProteinID:AQL01155.1	UniProt:B4FTL2	EMBL:BT040450	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009941	GO:GO:0015031	PFAM:PF04278	PANTHER:PTHR33926	PANTHER:PTHR33926:SF2
InterPro:Tic22-like	UniParc:UPI00017B78DF	EnsemblPlantsGene:Zm00001d044931	EnsemblPlants:Zm00001d044931_P001	EnsemblPlants:Zm00001d044931_T001	SEG:seg

Description

Protein TIC 22 chloroplastic

Coordinates

chr9:+:7600907..7606215

Molecular Weight (calculated)

30082.4 Da

IEP (calculated)

8.635

GRAVY (calculated)

-0.021

Length

280 amino acids

Sequence
(BLAST)

001: MAPPDSISTC SSLPLAAAPM SEPTPFPFAA SPLPNPLVAT ASFLQHHLSR LASHLNVPRP ALAAAAARTP GPQGASLSLS LAPDEVARAL TGTPVFTVCN
101: SSNEFVLVSD PATGLRSLGL LCFRSEDADA LLSHVRTRQP VLGKGAKVVP ITLDQVYMLK AEGIAFRFLP DPLQIKNALE MKSGLTAFDG VPVFQSDLLV
201: VKKQKKRYCP VYFQKEDIER ELTRASKGSR GSALSKKIMV GSLEDVLKKM EINERDSGWD DLIFIPPGKS LNQHINEVSA

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.