CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08874
KRH28253
KRH35244
KRH38387
KRH71094
KRH75571
KRH77243

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	KRH71094	AT3G24140.1	21798944
AT4G33350.1	KRH75571	AT3G24140.1	21798944
AT4G33350.1	KRH28253	AT3G59840.1	21798944
AT4G33350.1	KRH77243	AT3G59840.1	21798944
AT4G33350.1	KRH08874	AT4G25660.1	21798944
AT4G33350.1	KRH35244	AT4G25660.1	21798944
AT4G33350.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51981	Soybean	plastid	93.8	93.08
KRG99384	Soybean	plastid	55.43	91.67
VIT_18s0001g10590.t01	Wine grape	plastid	74.81	69.68
Os06t0213200-01	Rice	cytosol, mitochondrion	15.12	67.24
AT4G33350.1	Thale cress	plastid	66.67	64.18
CDX75346	Canola	plastid	65.12	62.69
Bra011434.1-P	Field mustard	plastid	63.57	61.65
PGSC0003DMT400020682	Potato	plastid	68.6	60.41
Solyc04g079000.2.1	Tomato	plastid	68.6	60.41
TraesCS7B01G076600.1	Wheat	plastid	56.98	54.65
TraesCS7D01G172300.1	Wheat	plastid	57.36	54.61
TraesCS7A01G171800.1	Wheat	plastid	57.36	54.41
GSMUA_Achr6P30510_001	Banana	plastid	60.85	53.58
GSMUA_Achr9P27070_001	Banana	plastid	27.91	52.94
Zm00001d044931_P001	Maize	plastid	55.81	51.43
EER89408	Sorghum	plastid	55.81	50.88
CDX68969	Canola	plastid	63.95	50.0
HORVU7Hr1G035680.1	Barley	cytosol	51.55	47.84
KRH42720	Soybean	extracellular, plasma membrane	24.81	32.32
KRH58822	Soybean	cytosol	31.4	32.02

Protein Annotations

EMBL:ACUP02002160	EnsemblPlants:KRH61282	EnsemblPlantsGene:GLYMA_04G038400	EntrezGene:100802935	Gene3D:3.40.1350.100	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	PFAM:PF04278
ProteinID:KRH61282	ProteinID:KRH61282.1	UniParc:UPI000233A6B8	UniProt:I1JTI7	MapMan:23.1.3.6	:

Description

hypothetical protein

Coordinates

chr4:+:3054381..3058142

Molecular Weight (calculated)

28724.5 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.286

Length

258 amino acids

Sequence
(BLAST)

001: MESRGHSNPL LSFSSFIHQH CVRLGSDLAT RLDDTKRALA QAHHNLLFPK HALAATSTLG SLHVAKSLVG TSVYTVSNSN NEFVLISDAD GAKSIGLLCF
101: RQEDAEAFLA QVRSRSRELR SKARVVPITL DQVYMLKVEG IAFRFLPDPV QIRNALELKP ANKGGFDGVP VFQSELLVVK KKKKRYCPVY FSKEDIEQEL
201: SKVSRASRGP GVSQHIAVGS LEDVLRKMEM SERNSGWEDL IFIPPGKSRS QHIQELNE

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.