Factsheet for GSMUA_Achr6P30510_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P06030_001
GSMUA_Achr8P28400_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	GSMUA_Achr2P06030_001	AT3G24140.1	21798944
AT4G33350.1	GSMUA_Achr8P28400_001	AT3G24140.1	21798944
AT4G33350.1	GSMUA_AchrUn_...	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0213200-01	Rice	cytosol, mitochondrion	15.36	77.59
GSMUA_Achr9P27070_001	Banana	plastid	32.76	70.59
TraesCS7D01G172300.1	Wheat	plastid	62.8	67.9
TraesCS7A01G171800.1	Wheat	plastid	62.8	67.65
TraesCS7B01G076600.1	Wheat	plastid	61.77	67.29
EER89408	Sorghum	plastid	61.77	63.96
Zm00001d044931_P001	Maize	plastid	60.07	62.86
KRG99384	Soybean	plastid	33.11	62.18
KRH51981	Soybean	plastid	54.27	61.15
VIT_18s0001g10590.t01	Wine grape	plastid	57.68	61.01
KRH61282	Soybean	nucleus	53.58	60.85
CDX75346	Canola	plastid	53.92	58.96
Bra011434.1-P	Field mustard	plastid	52.9	58.27
AT4G33350.1	Thale cress	plastid	52.9	57.84
PGSC0003DMT400020682	Potato	plastid	57.0	57.0
Solyc04g079000.2.1	Tomato	plastid	57.0	57.0
HORVU7Hr1G035680.1	Barley	cytosol	50.85	53.6
CDX68969	Canola	plastid	51.88	46.06
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	18.77	27.5

Protein Annotations

EnsemblPlants:GSMUA_Achr6P30510_001	EnsemblPlants:GSMUA_Achr6T30510_001	EnsemblPlantsGene:GSMUA_Achr6G30510_001	Gene3D:3.40.1350.100	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	PFAM:PF04278	SEG:seg
UniParc:UPI000294CA91	UniProt:M0TBJ6	MapMan:23.1.3.6	:	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G30510_001]

Coordinates

chr6:+:30485380..30493392

Molecular Weight (calculated)

31931.6 Da

IEP (calculated)

9.867

GRAVY (calculated)

-0.145

Length

293 amino acids

Sequence
(BLAST)

001: MPNAHPTLPV SAVPMEPSSP LSNPNPNPFA AAASFLRHHL SRLGSDLSAG VDHGRRLVRA VASPPPFAAT SVGALAPEPA RAEGKRAFDL ALSPEYVAKT
101: LAGTAVYTVS NSNNEFVLIS DPNNSLRSLG ILCFRQEDAQ TLLAQVRLRQ PILGKGARVV PITLDQVYML KVEGIAFRFL PDPLQIKNAL ALKSLDVSRG
201: FDGVPVFQSD LLVVKKKNKR YCPIYFQKED IERELLKVSK ASRGSGFSQN IMVGSLEDVL KKMEMNDKNS GWDDLIFIPP GKSYTEHINK VSA

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.