CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08874
KRH28253
KRH35244
KRH38387
KRH71094
KRH75571
KRH77243

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	KRH71094	AT3G24140.1	21798944
AT4G33350.1	KRH75571	AT3G24140.1	21798944
AT4G33350.1	KRH28253	AT3G59840.1	21798944
AT4G33350.1	KRH77243	AT3G59840.1	21798944
AT4G33350.1	KRH08874	AT4G25660.1	21798944
AT4G33350.1	KRH35244	AT4G25660.1	21798944
AT4G33350.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51981	Soybean	plastid	94.23	56.54
KRH61282	Soybean	nucleus	91.67	55.43
VIT_18s0001g10590.t01	Wine grape	plastid	76.92	43.32
AT4G33350.1	Thale cress	plastid	70.51	41.04
CDX75346	Canola	plastid	68.59	39.93
PGSC0003DMT400020682	Potato	plastid	73.72	39.25
Bra011434.1-P	Field mustard	plastid	66.67	39.1
Solyc04g079000.2.1	Tomato	plastid	73.08	38.91
TraesCS7D01G172300.1	Wheat	plastid	60.26	34.69
TraesCS7B01G076600.1	Wheat	plastid	59.62	34.57
TraesCS7A01G171800.1	Wheat	plastid	59.62	34.19
GSMUA_Achr6P30510_001	Banana	plastid	62.18	33.11
Zm00001d044931_P001	Maize	plastid	58.97	32.86
EER89408	Sorghum	plastid	58.97	32.51
GSMUA_Achr9P27070_001	Banana	plastid	27.56	31.62
CDX68969	Canola	plastid	66.67	31.52
HORVU7Hr1G035680.1	Barley	cytosol	55.13	30.94
KRH58822	Soybean	cytosol	32.05	19.76
KRH42720	Soybean	extracellular, plasma membrane	23.08	18.18
Os06t0213200-01	Rice	cytosol, mitochondrion	4.49	12.07

Protein Annotations

EMBL:ACUP02011042	EnsemblPlants:KRG99384	EnsemblPlantsGene:GLYMA_18G140900	Gene3D:3.40.1350.100	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	PFAM:PF04278	ProteinID:KRG99384
ProteinID:KRG99384.1	UniParc:UPI000295E8C3	UniProt:K7MS17	MapMan:23.1.3.6	:	:

Description

hypothetical protein

Coordinates

chr18:-:21505256..21507050

Molecular Weight (calculated)

17497.0 Da

IEP (calculated)

8.891

GRAVY (calculated)

-0.185

Length

156 amino acids

Sequence
(BLAST)

001: MESRGHSNLL LSFSSFIHQH CHVAKSLVGT SIFTVNNSNN EFVLISDPDG AKSIGLLCFR QEDAEAFLAQ VRSRSRELRS KAKVVPITLD QVEGIAFRFL
101: LDPVQIRNAL ESELLAVKKR NKHYCPVYFS KEDIEQELSK VSRASRAPGV SQHITV

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.