Factsheet for Solyc04g079000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082060.1.1
Solyc05g053660.1.1
Solyc08g077280.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	Solyc05g053660.1.1	AT3G24140.1	21798944
AT4G33350.1	Solyc08g077280.1.1	AT3G59840.1	21798944
AT4G33350.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020682	Potato	plastid	96.93	96.93
KRG99384	Soybean	plastid	38.91	73.08
VIT_18s0001g10590.t01	Wine grape	plastid	67.58	71.48
KRH51981	Soybean	plastid	61.43	69.23
KRH61282	Soybean	nucleus	60.41	68.6
Os06t0213200-01	Rice	cytosol, mitochondrion	12.63	63.79
CDX75346	Canola	plastid	57.0	62.31
Bra011434.1-P	Field mustard	plastid	55.97	61.65
AT4G33350.1	Thale cress	plastid	55.97	61.19
GSMUA_Achr6P30510_001	Banana	plastid	57.0	57.0
TraesCS7B01G076600.1	Wheat	plastid	51.19	55.76
TraesCS7D01G172300.1	Wheat	plastid	51.54	55.72
TraesCS7A01G171800.1	Wheat	plastid	51.19	55.15
GSMUA_Achr9P27070_001	Banana	plastid	24.57	52.94
Zm00001d044931_P001	Maize	plastid	49.83	52.14
EER89408	Sorghum	plastid	50.17	51.94
CDX68969	Canola	plastid	54.95	48.79
HORVU7Hr1G035680.1	Barley	cytosol	45.39	47.84
Solyc09g092530.2.1	Tomato	plastid	28.67	31.94

Protein Annotations

EnsemblPlants:Solyc04g079000.2.1	EnsemblPlantsGene:Solyc04g079000.2	Gene3D:3.40.1350.100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0015031	InterPro:Tic22-like	PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	PFAM:PF04278	SEG:seg
UniParc:UPI0002766E00	UniProt:K4BUY4	MapMan:23.1.3.6	:	:	:

Description

Protein TIC 22, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G33350) UniProtKB/Swiss-Prot;Acc:Q9SZB2]

Coordinates

chr4:-:63614775..63619550

Molecular Weight (calculated)

32461.1 Da

IEP (calculated)

9.827

GRAVY (calculated)

-0.271

Length

293 amino acids

Sequence
(BLAST)

001: MESKPSSGFG PSSSPLLSLS TFVHQHCSRL GAELANRFDE AKRLSSKIAA DFMQQPLPAA IGRSCSLPLH SYHLSLPFAS VSQRQEKVAK NTGLSSDYVA
101: KTLTGTSVYT VSNSNNEFVL ISDPNSAKSI GLLCFRQEDA EAFLAQVRLR KKEVRGGAKV VPLTLDQVYM LKVEGIAFRF LPDPVQIKNA MELKASDVKT
201: GFDGVPVFQS DLLVVKKRNR RYCPIYFRKE DIEKELSSRA LRGSSVSQHI MVGTLEDVLK KMEISQRNSG WEDLIFIPPG KSHSQHIQDV TKA

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.