CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EES19768
KXG22636

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33350.1	KXG22636	AT3G24140.1	21798944
AT4G33350.1	EES19768	AT3G59840.1	21798944
AT4G33350.1	EER87703	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0213200-01	Rice	cytosol, mitochondrion	18.73	91.38
Zm00001d044931_P001	Maize	plastid	85.51	86.43
TraesCS7B01G076600.1	Wheat	plastid	79.51	83.64
TraesCS7D01G172300.1	Wheat	plastid	79.15	82.66
TraesCS7A01G171800.1	Wheat	plastid	78.8	81.99
HORVU7Hr1G035680.1	Barley	cytosol	63.6	64.75
GSMUA_Achr6P30510_001	Banana	plastid	63.96	61.77
GSMUA_Achr9P27070_001	Banana	plastid	28.98	60.29
KRG99384	Soybean	plastid	32.51	58.97
KRH61282	Soybean	nucleus	50.88	55.81
KRH51981	Soybean	plastid	50.88	55.38
VIT_18s0001g10590.t01	Wine grape	plastid	52.65	53.79
CDX75346	Canola	plastid	50.88	53.73
Bra011434.1-P	Field mustard	plastid	50.18	53.38
AT4G33350.1	Thale cress	plastid	48.41	51.12
PGSC0003DMT400020682	Potato	plastid	52.65	50.85
Solyc04g079000.2.1	Tomato	plastid	51.94	50.17
CDX68969	Canola	plastid	49.12	42.12
EER96244	Sorghum	plastid	35.34	34.6

Protein Annotations

MapMan:23.1.3.6	Gene3D:3.40.1350.100	EntrezGene:8070764	UniProt:C5Z6H4	EnsemblPlants:EER89408	ProteinID:EER89408
ProteinID:EER89408.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0015031	PFAM:PF04278
PANTHER:PTHR33926	PANTHER:PTHR33926:SF2	EnsemblPlantsGene:SORBI_3010G082500	unigene:Sbi.7282	InterPro:Tic22-like	UniParc:UPI0001A8982D
RefSeq:XP_002438041.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:7046876..7050560

Molecular Weight (calculated)

30266.6 Da

IEP (calculated)

9.164

GRAVY (calculated)

-0.083

Length

283 amino acids

Sequence
(BLAST)

001: MAPPDSISTR SSLPLAAAPM SDPTPSPYAA SPPPPNPLAA AASFLQHHLS RLASHLNAPR PALAAAAAAA RTPGPQGASL SLALAPDEVA RALTGTPVFT
101: VCNSSNEFVL VSDPATGLRS LGLLCFRSED ADALLSHVRT RQPVLGKGAK VVPITLDQVY MLKAEGIAFR FLPDPLQIKN ALEMKSGLTA FDGVPVFQSD
201: LLVVKKQKKR YCPIYFQKED IERELTRASK GSRGSVLSKQ IMVGSLEDVL KKMEINERNS GWDDLIFIPP GKNLNQHINE VSA

Best Arabidopsis Sequence Match ( AT4G33350.1 )
(BLAST)

001: MESSVKPNPF LSFSSFIHHQ CTRFSSDLSA RIEDTKRFAE TLATRRFSLP TPPPFASVSQ SKSGTPTTTL SPSLVAKALA GTSVFTVSNT NNEFVLISDP
101: TGGKSIGLLC FRQEDAEAFL AQARLRRREL KTNAKVVPIT LDQVYLLKVE GISFRFLPDP IQIKNALELK SSGNKNGFDG VPVFQSELLV VRKKNRRYCP
201: VYFSKEDIER ELSKYTRASR GDQQIMVGSL EDVLRKMEMS EKNSGWEDVI FIPPGRSYAQ HMQDLIKE

Arabidopsis Description

TIC22Tic22-IV [Source:UniProtKB/TrEMBL;Acc:A0A178UWE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.