CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90611
EER92904	nucleus
EER93246
EER98886
EES02317
EES07423	nucleus
EES15038
KXG27015	nucleus
KXG27016	nucleus
KXG40306
OQU86794
OQU92884

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	EES02317	AT1G19980.1	21798944
AT3G24140.1	OQU86794	AT1G19980.1	21798944
AT3G24140.1	KXG40306	AT1G62990.1	21798944
AT3G24140.1	EER90611	AT1G73790.1	21798944
AT3G24140.1	EER98886	AT3G25710.1	21798944
AT3G24140.1	EES15038	AT3G25710.1	21798944
AT3G24140.1	OQU92884	AT3G25710.1	21798944
AT3G24140.1	EER93246	AT4G02770.1	21798944
AT3G24140.1	EES07423	AT5G46690.1	17088607
AT3G24140.1	KXG27015	AT5G46690.1	17088607
AT3G24140.1	KXG27016	AT5G46690.1	17088607
AT3G24140.1	EES07423	AT5G46690.1	21798944
AT3G24140.1	KXG27015	AT5G46690.1	21798944
AT3G24140.1	KXG27016	AT5G46690.1	21798944
AT3G24140.1	EER92904	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009715_P001	Maize	nucleus	75.93	83.01
Os05t0586300-00	Rice	nucleus	63.68	75.19
GSMUA_Achr8P28400_001	Banana	nucleus	29.76	68.34
GSMUA_Achr2P06030_001	Banana	nucleus	45.08	64.58
TraesCS1B01G300100.1	Wheat	nucleus	58.42	64.03
TraesCS1D01G289400.1	Wheat	nucleus	58.64	63.96
TraesCS1A01G290800.1	Wheat	nucleus	58.21	63.33
HORVU1Hr1G071330.3	Barley	nucleus	58.42	61.24
Solyc09g091760.1.1	Tomato	nucleus	30.42	56.28
VIT_05s0029g00050.t01	Wine grape	nucleus	46.61	53.65
Solyc05g053660.1.1	Tomato	nucleus	43.76	52.22
PGSC0003DMT400040761	Potato	nucleus	43.76	51.28
PGSC0003DMT400076223	Potato	nucleus	30.85	49.47
KRH75571	Soybean	nucleus	46.17	49.18
Bra028357.1-P	Field mustard	nucleus	42.23	48.25
Bra001929.1-P	Field mustard	nucleus	42.45	47.9
CDX92996	Canola	nucleus	42.45	47.9
KRH71094	Soybean	nucleus	46.17	47.31
CDX94841	Canola	nucleus	42.23	47.3
AT3G24140.1	Thale cress	nucleus	42.67	47.1
CDX85167	Canola	nucleus	39.82	46.79
CDX77460	Canola	nucleus	35.23	45.22
Bra028351.1-P	Field mustard	nucleus	34.57	43.89
CDY18083	Canola	nucleus	35.23	41.93
CDY64587	Canola	nucleus	33.48	41.24
KXG22733	Sorghum	nucleus	19.69	37.82
KXG30709	Sorghum	nucleus	23.19	30.29
EER95359	Sorghum	nucleus	23.63	30.25
OQU91887	Sorghum	nucleus	21.23	29.94
EES07423	Sorghum	nucleus	22.54	29.51
EER96894	Sorghum	nucleus	21.23	28.7
KXG27015	Sorghum	cytosol	21.44	28.57
KXG27016	Sorghum	cytosol, nucleus, plastid	19.47	25.72
OQU93358	Sorghum	nucleus	18.16	25.7
EER88428	Sorghum	nucleus	20.35	24.47
EES06610	Sorghum	nucleus	19.04	21.86

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A1B6PAB9	InterPro:ACT_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009987	GO:GO:0010052	GO:GO:0010377	GO:GO:0010444	GO:GO:0016043
GO:GO:0019538	GO:GO:0030154	GO:GO:0045597	GO:GO:0045893	GO:GO:0046983	GO:GO:0051782
GO:GO:0061086	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KXG22636
ProteinID:KXG22636	ProteinID:KXG22636.1	PFAM:PF00010	PFscan:PS50888	PFscan:PS51671	PANTHER:PTHR11969
PANTHER:PTHR11969:SF46	SMART:SM00353	EnsemblPlantsGene:SORBI_3009G250000	SUPFAM:SSF47459	UniParc:UPI00081AE3C2	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:58527603..58532060

Molecular Weight (calculated)

49020.5 Da

IEP (calculated)

5.691

GRAVY (calculated)

-0.482

Length

457 amino acids

Sequence
(BLAST)

001: MHVSIVSSSN SKHLLRCSAP RPDHHIMDKE QQGSHLDSFA APPEDQHQQH AGGAETMVDY MLGHNHVHAP PAAPAPPTTQ SQQAVSFDKL SFSDVLQFAD
101: FGPKLALNQP AASAGPGEDA DDIDDDDDDD GYFFRFQSLP ATTLPQRHAN PEAAGSKTTT ADQDGGAGGG VGGVSESTTL VQQGDHGRAE NKGAGDQQQG
201: KSGRRKRPRT VKTSEEVESQ RMTHIAVERN RRRQMNEYLR VLRSLMPGSY VQRGDQASII GGAIEFIREL EQLIQCLESQ KRRRLYGGSG DAPRPPPVVD
301: AAVPGGAPIT STTQPQVPPP PQFFPPSHPF PVASGGGDAK IILDLEAAGG AVVDAGGGLR EEVAENKSCL ADIEVRALGA DAMIKILSRR RPGQLIKTIA
401: ALEDMQMSIL HTNITTIEQT VLYSFNVKIV GEARYSAEDI AGAVHQILSF IDVNYTL

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.