CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91274
KRG92013
KRG99605	nucleus
KRH03996
KRH11849
KRH16156	nucleus
KRH16909	nucleus
KRH24348
KRH27981
KRH34774
KRH35533
KRH36857
KRH39520	nucleus
KRH45428	nucleus
KRH45479	nucleus
KRH52870	nucleus
KRH57265
KRH62159	nucleus
KRH65887
KRH66740
KRH70619
KRH72519	nucleus
KRH73107	nucleus
KRH74438	nucleus
KRH75497
KRH75598	nucleus
KRH75670
KRH77464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	KRH11849	AT1G19980.1	21798944
AT3G24140.1	KRH36857	AT1G19980.1	21798944
AT3G24140.1	KRH03996	AT1G62990.1	21798944
AT3G24140.1	KRH27981	AT1G62990.1	21798944
AT3G24140.1	KRH57265	AT1G62990.1	21798944
AT3G24140.1	KRH77464	AT1G62990.1	21798944
AT3G24140.1	KRH65887	AT1G73790.1	21798944
AT3G24140.1	KRH66740	AT1G73790.1	21798944
AT3G24140.1	KRH75670	AT1G73790.1	21798944
AT3G24140.1	KRG92013	AT3G25710.1	21798944
AT3G24140.1	KRH34774	AT3G25710.1	21798944
AT3G24140.1	KRH70619	AT3G25710.1	21798944
AT3G24140.1	KRH75497	AT3G25710.1	21798944
AT3G24140.1	KRG91274	AT4G02770.1	21798944
AT3G24140.1	KRH35533	AT4G02770.1	21798944
AT3G24140.1	KRH24348	AT5G45600.1	21798944
AT3G24140.1	KRH45428	AT5G46690.1	17088607
AT3G24140.1	KRH75598	AT5G46690.1	17088607
AT3G24140.1	KRH45428	AT5G46690.1	21798944
AT3G24140.1	KRH75598	AT5G46690.1	21798944
AT3G24140.1	KRG99605	AT5G65640.1	17088607
AT3G24140.1	KRH16156	AT5G65640.1	17088607
AT3G24140.1	KRH16909	AT5G65640.1	17088607
AT3G24140.1	KRH39520	AT5G65640.1	17088607
AT3G24140.1	KRH45479	AT5G65640.1	17088607
AT3G24140.1	KRH52870	AT5G65640.1	17088607
AT3G24140.1	KRH62159	AT5G65640.1	17088607
AT3G24140.1	KRH72519	AT5G65640.1	17088607
AT3G24140.1	KRH73107	AT5G65640.1	17088607
AT3G24140.1	KRH74438	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71094	Soybean	nucleus	96.27	92.6
GSMUA_Achr8P28400_001	Banana	nucleus	33.8	72.86
VIT_05s0029g00050.t01	Wine grape	nucleus	65.5	70.78
GSMUA_Achr2P06030_001	Banana	nucleus	50.82	68.34
Bra001929.1-P	Field mustard	nucleus	58.74	62.22
CDX92996	Canola	nucleus	58.74	62.22
CDX94841	Canola	nucleus	58.97	62.01
Solyc05g053660.1.1	Tomato	nucleus	54.55	61.1
Bra028357.1-P	Field mustard	nucleus	56.64	60.75
PGSC0003DMT400040761	Potato	nucleus	54.55	60.0
AT3G24140.1	Thale cress	nucleus	57.58	59.66
CDX85167	Canola	nucleus	53.85	59.38
CDX77460	Canola	nucleus	46.85	56.46
Os05t0586300-00	Rice	nucleus	47.32	52.45
Bra028351.1-P	Field mustard	nucleus	43.59	51.94
CDY18083	Canola	nucleus	45.45	50.78
CDY64587	Canola	nucleus	43.59	50.4
Zm00001d009715_P001	Maize	nucleus	48.48	49.76
KRH11385	Soybean	cytosol	21.68	48.69
KRH20902	Soybean	cytosol	21.45	48.17
TraesCS1B01G300100.1	Wheat	nucleus	45.92	47.24
TraesCS1D01G289400.1	Wheat	nucleus	45.92	47.02
TraesCS1A01G290800.1	Wheat	nucleus	45.69	46.67
KXG22636	Sorghum	nucleus	49.18	46.17
HORVU1Hr1G071330.3	Barley	nucleus	46.15	45.41
KRH45428	Soybean	nucleus	24.71	34.98
KRG96858	Soybean	nucleus	27.04	34.94
KRH62289	Soybean	nucleus	26.34	34.88
KRH75598	Soybean	nucleus	24.48	34.65
KRH18131	Soybean	nucleus	26.57	33.93
KRH16792	Soybean	nucleus	25.41	33.64
KRH16521	Soybean	nucleus	25.87	33.53
KRH64504	Soybean	nucleus	26.81	33.43
KRH68589	Soybean	nucleus	26.57	33.24
KRH53000	Soybean	nucleus	25.87	33.23
KRH53438	Soybean	nucleus	26.81	32.95
KRG92821	Soybean	nucleus	24.94	32.62
KRH72411	Soybean	nucleus	25.87	32.08
KRH33976	Soybean	nucleus	24.71	31.93
KRH47774	Soybean	nucleus	27.97	31.25
KRH06347	Soybean	nucleus	27.51	29.65

Protein Annotations

EntrezGene:100813515	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02000384	EnsemblPlantsGene:GLYMA_01G093400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1J6U3	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRH75571	ProteinID:KRH75571	ProteinID:KRH75571.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002948559	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:28318678..28322365

Molecular Weight (calculated)

48835.6 Da

IEP (calculated)

5.132

GRAVY (calculated)

-0.703

Length

429 amino acids

Sequence
(BLAST)

001: MEKDHNYSAP PPSMPPIFNT LDYSLDQHHL YAPNQHQQHL MKFQGSGDEN NNGSMVDYMP QTTPPHGFYG ATSAATTSYD KLSFADVMQF ADFGPKLALN
101: QAKNCEESAI DPVYFLKFPV LNNKMEEDQQ NMMMNNDDPD GDEAENHHHD ERFNNLVSVE DKEGMMVRED EETTRVSDDN NSVQIRFLGH EEPQQKNNCA
201: VQENKNGKRK RPRTVKTSEE VESQRMTHIA VERNRRKQMN EHLRVLRSLM PGSYVQRGDQ ASIIGGAIEF VRELEQLLQC LESQKRRRLL GEAQARQVGD
301: PSLATQQQPP FFPPLPIPNE QMKLVEMETG LHEETAESKS CLADVEVKLL GFDAMIKILS RRRPGQLIKT IAALEDLQLI ILHTNITTIE QTVLYSFNVK
401: VASDSRFTAE DIASSVQQIF NFIHANTSM

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.