Factsheet for VIT_05s0029g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s1312g00010.t01	nucleus
VIT_01s0011g02940.t01
VIT_02s0012g01450.t01	nucleus
VIT_02s0025g04630.t01
VIT_03s0038g00960.t01
VIT_05s0020g03180.t01
VIT_07s0151g01000.t01
VIT_08s0040g01030.t01
VIT_10s0003g05660.t01
VIT_17s0000g03550.t01	nucleus
VIT_18s0001g08040.t01	nucleus
VIT_18s0001g14300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	VIT_18s0001g14300.t01	AT1G19980.1	21798944
AT3G24140.1	VIT_02s0025g04630.t01	AT1G62990.1	21798944
AT3G24140.1	VIT_08s0040g01030.t01	AT1G73790.1	21798944
AT3G24140.1	VIT_10s0003g05660.t01	AT1G73790.1	21798944
AT3G24140.1	VIT_01s0011g02940.t01	AT3G25710.1	21798944
AT3G24140.1	VIT_05s0020g03180.t01	AT4G02770.1	21798944
AT3G24140.1	VIT_07s0151g01000.t01	AT4G02770.1	21798944
AT3G24140.1	VIT_03s0038g00960.t01	AT5G45600.1	21798944
AT3G24140.1	VIT_02s0012g01450.t01	AT5G46690.1	17088607
AT3G24140.1	VIT_02s0012g01450.t01	AT5G46690.1	21798944
AT3G24140.1	VIT_00s1312g00010.t01	AT5G65640.1	17088607
AT3G24140.1	VIT_17s0000g03550.t01	AT5G65640.1	17088607
AT3G24140.1	VIT_18s0001g08040.t01	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28400_001	Banana	nucleus	37.28	74.37
GSMUA_Achr2P06030_001	Banana	nucleus	58.94	73.35
Solyc05g053660.1.1	Tomato	nucleus	63.73	66.06
KRH75571	Soybean	nucleus	70.78	65.5
PGSC0003DMT400040761	Potato	nucleus	64.23	65.38
KRH71094	Soybean	nucleus	70.78	63.0
Bra001929.1-P	Field mustard	nucleus	62.97	61.73
CDX92996	Canola	nucleus	62.97	61.73
CDX94841	Canola	nucleus	62.97	61.27
Bra028357.1-P	Field mustard	nucleus	61.46	61.0
AT3G24140.1	Thale cress	nucleus	62.97	60.39
CDX85167	Canola	nucleus	56.68	57.84
Os05t0586300-00	Rice	nucleus	52.9	54.26
CDX77460	Canola	nucleus	48.11	53.65
Bra028351.1-P	Field mustard	nucleus	46.85	51.67
Zm00001d009715_P001	Maize	nucleus	53.9	51.2
CDY18083	Canola	nucleus	49.37	51.04
CDY64587	Canola	nucleus	47.36	50.67
TraesCS1D01G289400.1	Wheat	nucleus	51.39	48.69
TraesCS1B01G300100.1	Wheat	nucleus	51.13	48.68
TraesCS1A01G290800.1	Wheat	nucleus	50.63	47.86
VIT_05s0020g02700.t01	Wine grape	nucleus	22.67	47.37
KXG22636	Sorghum	nucleus	53.65	46.61
HORVU1Hr1G071330.3	Barley	nucleus	49.87	45.41
VIT_18s0001g06650.t01	Wine grape	nucleus	27.71	35.48
VIT_07s0191g00240.t01	Wine grape	nucleus	27.96	34.47
VIT_14s0128g00110.t01	Wine grape	nucleus	27.71	34.06
VIT_02s0012g01450.t01	Wine grape	nucleus	26.45	33.33
VIT_16s0050g02500.t01	Wine grape	nucleus	27.71	32.54
VIT_15s0048g02510.t01	Wine grape	nucleus	29.47	32.41

Protein Annotations

EntrezGene:100258890	wikigene:100258890	MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	EMBL:AM425576
ProteinID:CAN60177	ProteinID:CAN60177.1	ProteinID:CCB44329	ProteinID:CCB44329.1	UniProt:F6GWG6	EMBL:FN594958
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR002912
InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100258890	wikigene:LOC100258890	PFAM:PF00010	PFscan:PS50888
PFscan:PS51671	PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002108682
ArrayExpress:VIT_05s0029g00050	EnsemblPlantsGene:VIT_05s0029g00050	EnsemblPlants:VIT_05s0029g00050.t01	RefSeq:XP_002266835	RefSeq:XP_002266835.1	RefSeq:XP_010650359.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:14065515..14067278

Molecular Weight (calculated)

44898.1 Da

IEP (calculated)

4.757

GRAVY (calculated)

-0.548

Length

397 amino acids

Sequence
(BLAST)

001: MDKEENYSAA LPASFTGLDY TLNQQQQQEQ LMKPRIGESS DDNNHGVVDY MLSNPQHQQL TSSGFCSSSF DKLSFADVMQ FADFGPKLAL NQTKVSEEET
101: GIDPVYFLKF PVLNDKLQDH DSLMVPQPVV GGEERYDDAR IVEEIGEGED EEENTSVQLQ FLGENLQKNT VMDAKNKRKR PRTIKTSEEV ESQRMTHIAV
201: ERNRRKQMNE HLRVLRSLMP SSYVQRGDQA SIIGGAIEFV RELEQLLQCL ESQKRRRLFG DAPRQMGDSS SLAIQQPQQP PFFPPLPLPN DQINFGTGLR
301: EETAENKSCL ADVEVRLLGF DAMIKILSRR RPGQLIKTIA ALEDLQLNIL HTNITTIEQT VLYSFNVKIA SESRFTAEDI ASSVQQILSF IHANSSI

Best Arabidopsis Sequence Match ( AT3G24140.1 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NISGSSNLGN IVFT

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.