CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68212
CDX73014
CDX77682	nucleus
CDX83546
CDX83731
CDX84824
CDX93852
CDX97806
CDX99756
CDY03201	nucleus
CDY08769	nucleus
CDY10749
CDY11089
CDY13580
CDY21916
CDY22079
CDY23988
CDY29658
CDY35175	nucleus
CDY37835	nucleus
CDY38963
CDY39435
CDY43422
CDY45968
CDY47130
CDY57605
CDY60144
CDY62942
CDY63053	nucleus
CDY64892
CDY66559
CDY69978	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24140.1	CDX83731	AT1G19980.1	21798944
AT3G24140.1	CDY43422	AT1G19980.1	21798944
AT3G24140.1	CDY57605	AT1G19980.1	21798944
AT3G24140.1	CDY62942	AT1G19980.1	21798944
AT3G24140.1	CDX93852	AT1G62990.1	21798944
AT3G24140.1	CDY45968	AT1G62990.1	21798944
AT3G24140.1	CDY64892	AT1G62990.1	21798944
AT3G24140.1	CDY66559	AT1G62990.1	21798944
AT3G24140.1	CDX68212	AT1G73790.1	21798944
AT3G24140.1	CDX73014	AT1G73790.1	21798944
AT3G24140.1	CDY11089	AT1G73790.1	21798944
AT3G24140.1	CDY60144	AT1G73790.1	21798944
AT3G24140.1	CDX84824	AT2G30590.1	21798944
AT3G24140.1	CDX97806	AT2G30590.1	21798944
AT3G24140.1	CDY10749	AT2G30590.1	21798944
AT3G24140.1	CDY23988	AT2G30590.1	21798944
AT3G24140.1	CDY29658	AT2G30590.1	21798944
AT3G24140.1	CDY47130	AT2G30590.1	21798944
AT3G24140.1	CDX83546	AT3G25710.1	21798944
AT3G24140.1	CDX99756	AT3G25710.1	21798944
AT3G24140.1	CDY13580	AT3G25710.1	21798944
AT3G24140.1	CDY21916	AT4G02770.1	21798944
AT3G24140.1	CDY22079	AT4G02770.1	21798944
AT3G24140.1	CDY38963	AT5G45600.1	21798944
AT3G24140.1	CDY39435	AT5G45600.1	21798944
AT3G24140.1	CDX77682	AT5G46690.1	17088607
AT3G24140.1	CDY03201	AT5G46690.1	17088607
AT3G24140.1	CDY35175	AT5G46690.1	17088607
AT3G24140.1	CDY63053	AT5G46690.1	17088607
AT3G24140.1	CDX77682	AT5G46690.1	21798944
AT3G24140.1	CDY03201	AT5G46690.1	21798944
AT3G24140.1	CDY35175	AT5G46690.1	21798944
AT3G24140.1	CDY63053	AT5G46690.1	21798944
AT3G24140.1	CDY08769	AT5G65640.1	17088607
AT3G24140.1	CDY37835	AT5G65640.1	17088607
AT3G24140.1	CDY69978	AT5G65640.1	17088607

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77460	Canola	nucleus	82.01	89.61
CDX92996	Canola	nucleus	86.12	82.72
CDX94841	Canola	nucleus	86.12	82.11
AT3G24140.1	Thale cress	nucleus	82.78	77.78
GSMUA_Achr8P28400_001	Banana	nucleus	34.7	67.84
CDY18083	Canola	nucleus	62.98	63.8
CDY64587	Canola	nucleus	59.64	62.53
GSMUA_Achr2P06030_001	Banana	nucleus	48.59	59.25
VIT_05s0029g00050.t01	Wine grape	nucleus	57.84	56.68
Solyc05g053660.1.1	Tomato	nucleus	55.01	55.87
PGSC0003DMT400040761	Potato	nucleus	55.27	55.13
KRH75571	Soybean	nucleus	59.38	53.85
KRH71094	Soybean	nucleus	59.38	51.79
Os05t0586300-00	Rice	nucleus	45.5	45.74
TraesCS1D01G289400.1	Wheat	nucleus	47.04	43.68
TraesCS1B01G300100.1	Wheat	nucleus	46.79	43.65
TraesCS1A01G290800.1	Wheat	nucleus	46.79	43.33
Zm00001d009715_P001	Maize	nucleus	46.02	42.82
CDY24717	Canola	nucleus	21.59	41.79
CDY08066	Canola	nucleus	22.11	41.55
CDY58338	Canola	nucleus	22.11	41.55
CDY18843	Canola	nucleus	21.34	41.29
HORVU1Hr1G071330.3	Barley	nucleus	46.27	41.28
CDY05233	Canola	nucleus	21.59	41.18
KXG22636	Sorghum	nucleus	46.79	39.82
CDY37634	Canola	nucleus	22.36	38.16
CDY41479	Canola	nucleus	24.68	33.57
CDY03201	Canola	cytosol	15.42	33.15
CDX91680	Canola	nucleus	23.91	32.52
CDY12528	Canola	nucleus	23.14	31.91
CDY19692	Canola	nucleus	28.79	31.73
CDY47059	Canola	nucleus	28.28	31.52
CDY14397	Canola	nucleus	28.53	31.27
CDY04811	Canola	nucleus	24.16	31.23
CDY21365	Canola	nucleus	23.91	30.9
CDY38734	Canola	nucleus	28.02	30.88
CDY51710	Canola	nucleus	24.68	30.87
CDY46652	Canola	nucleus	22.36	30.85
CDX96382	Canola	nucleus	25.19	30.15
CDY11386	Canola	nucleus	21.59	30.11
CDX77682	Canola	nucleus	24.94	29.94
CDY63053	Canola	nucleus	24.94	29.94
CDY07143	Canola	nucleus	23.65	29.68
CDY35175	Canola	nucleus	22.36	29.59
CDY65719	Canola	nucleus	22.88	29.57
CDY37820	Canola	nucleus	16.45	29.36
CDY50447	Canola	nucleus	24.42	29.32
CDX68274	Canola	nucleus	24.42	29.32
CDX72877	Canola	nucleus	24.68	29.27
CDY41734	Canola	nucleus	22.62	29.24
CDY03650	Canola	nucleus	24.42	29.14
CDX82171	Canola	nucleus	24.42	29.14
CDX96201	Canola	nucleus	25.19	27.84
CDY68483	Canola	nucleus	22.62	27.5
CDY33966	Canola	nucleus	21.34	27.48
CDX76598	Canola	nucleus	22.11	27.3
CDY48013	Canola	nucleus	22.11	27.04
CDY55926	Canola	nucleus	22.36	26.93
CDY27521	Canola	nucleus	21.34	26.77
CDX80049	Canola	nucleus	21.34	26.52
CDY41561	Canola	nucleus	20.82	25.96
CDY55929	Canola	nucleus	20.05	23.35

Protein Annotations

EnsemblPlants:CDX85167	EnsemblPlantsGene:GSBRNA2T00142760001	Gene3D:4.10.280.10	GO:A0A078D7U4	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR11514	PANTHER:PTHR11514:SF61	PFAM:PF00010	PFscan:PS50888	ProteinID:CDX85167	ProteinID:CDX85167.1
SEG:seg	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEA0C8	MapMan:15.5.32	:

Description

BnaC07g07390D

Coordinates

chrLK031840:+:1681187..1682903

Molecular Weight (calculated)

44548.9 Da

IEP (calculated)

5.851

GRAVY (calculated)

-0.702

Length

389 amino acids

Sequence
(BLAST)

001: MDKDYPTPNF LSEYSYSNDD KSSRMIDHMF KRNLQKQKQS MPQQQQLSPS GFGATPTFDK MSFADVMQFA DFGPMLALNQ TRSQNDQETW MDPFYILKFP
101: VFNGDHNQTH HLMSQEGVCE ENISNMFLEE QDNQEEKNDK NSMQLRYIGG EEDRENKNDT TKEVKKKRKR ARTRKTSEEV ESQRMAHIAV ERNRRKQMNE
201: HLRVLRSLMP GSYVQRGDQA SIVGGAIEFL SELEQLLQCL ESQKRRRILG ETNDMHGGDM TTTMITSSPI TSTNPLIITG NVTELEGGGG IQEEKAEKKS
301: CLADVEVKLL GFDAMIKILS RRRPGQLIMT IAALEDLHLS ILHTNITTME QTVLYSFNVK ITSETRFTAE DIASSIQEIF SFIHANTTM

Best Arabidopsis Sequence Match ( AT3G24140.2 )
(BLAST)

001: MDKDYSAPNF LGESSGGNDD NSSGMIDYMF NRNLQQQQKQ SMPQQQQHQL SPSGFGATPF DKMNFSDVMQ FADFGSKLAL NQTRNQDDQE TGIDPVYFLK
101: FPVLNDKIED HNQTQHLMPS HQTSQEGGEC GGNIGNVFLE EKEDQDDDND NNSVQLRFIG GEEEDRENKN VTKKEVKSKR KRARTSKTSE EVESQRMTHI
201: AVERNRRKQM NEHLRVLRSL MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRI LGETGRDMTT TTTSSSSPIT TVANQAQPLI ITGNVTELEG
301: GGGLREETAE NKSCLADVEV KLLGFDAMIK ILSRRRPGQL IKTIAALEDL HLSILHTNIT TMEQTVLYSF NVKITSETRF TAEDIASSIQ QIFSFIHANT
401: NM

Arabidopsis Description

FAMAFMA [Source:UniProtKB/TrEMBL;Acc:A0A178VKX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.