Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024404.1-P | Field mustard | nucleus | 99.72 | 99.72 |
| CDY69978 | Canola | nucleus | 89.97 | 90.22 |
| AT5G65640.1 | Thale cress | nucleus | 87.47 | 89.46 |
| CDY37835 | Canola | nucleus | 88.58 | 88.83 |
| KRH73107 | Soybean | mitochondrion, nucleus | 32.87 | 72.39 |
| CDX97027 | Canola | nucleus | 55.71 | 67.11 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 18.66 | 67.0 |
| CDX69821 | Canola | nucleus | 55.71 | 66.01 |
| KRG99605 | Soybean | cytosol | 27.02 | 61.39 |
| GSMUA_Achr1P26300_001 | Banana | nucleus | 40.39 | 60.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.55 | 59.92 |
| GSMUA_Achr7P03930_001 | Banana | nucleus | 38.72 | 58.65 |
| VIT_00s1312g00010.t01 | Wine grape | nucleus | 50.14 | 54.38 |
| KRH74438 | Soybean | nucleus | 49.86 | 53.59 |
| KRH39520 | Soybean | nucleus | 49.03 | 52.85 |
| GSMUA_Achr8P34120_001 | Banana | nucleus | 41.78 | 52.45 |
| KRH45479 | Soybean | nucleus | 46.52 | 52.19 |
| VIT_18s0001g08040.t01 | Wine grape | nucleus | 47.35 | 50.9 |
| KRH62159 | Soybean | nucleus | 46.52 | 50.61 |
| Solyc02g063430.2.1 | Tomato | nucleus | 44.85 | 50.16 |
| KRH52870 | Soybean | nucleus | 46.24 | 50.15 |
| KRH16909 | Soybean | nucleus | 46.52 | 49.7 |
| PGSC0003DMT400026937 | Potato | nucleus | 45.13 | 49.69 |
| VIT_17s0000g03550.t01 | Wine grape | nucleus | 44.29 | 49.38 |
| KRH16156 | Soybean | nucleus | 36.77 | 48.53 |
| KRH72519 | Soybean | nucleus | 44.85 | 48.35 |
| TraesCS4D01G328700.1 | Wheat | cytosol | 19.5 | 47.95 |
| PGSC0003DMT400078675 | Potato | nucleus | 43.18 | 46.27 |
| Solyc02g091690.2.1 | Tomato | nucleus | 42.34 | 46.2 |
| CDY19416 | Canola | nucleus | 22.56 | 43.78 |
| CDX98033 | Canola | nucleus | 22.56 | 43.78 |
| TraesCS4B01G331900.1 | Wheat | nucleus | 33.7 | 39.67 |
| Os03t0135700-01 | Rice | nucleus | 38.44 | 38.98 |
| TraesCS3A01G057900.1 | Wheat | nucleus | 33.98 | 37.31 |
| Zm00001d027546_P001 | Maize | nucleus | 38.16 | 37.23 |
| EER92904 | Sorghum | nucleus | 38.44 | 37.0 |
| TraesCS3D01G058100.1 | Wheat | nucleus | 30.36 | 36.82 |
| TraesCS4D01G329100.1 | Wheat | nucleus | 34.54 | 35.43 |
| TraesCS4D01G328900.1 | Wheat | nucleus | 34.26 | 35.34 |
| TraesCS3A01G058000.1 | Wheat | nucleus | 29.53 | 35.33 |
| TraesCS5A01G503300.1 | Wheat | nucleus | 34.54 | 35.13 |
| TraesCS4D01G329000.2 | Wheat | nucleus | 34.54 | 35.13 |
| TraesCS3B01G070400.1 | Wheat | nucleus | 29.8 | 35.08 |
| TraesCS5A01G503500.1 | Wheat | nucleus | 34.26 | 34.94 |
| TraesCSU01G069400.1 | Wheat | nucleus | 34.26 | 34.94 |
| HORVU4Hr1G080890.1 | Barley | nucleus | 34.54 | 34.93 |
| TraesCS4B01G332000.1 | Wheat | nucleus | 33.7 | 34.87 |
| TraesCS4D01G328800.1 | Wheat | nucleus | 33.98 | 34.56 |
| TraesCS5A01G503400.1 | Wheat | nucleus | 32.31 | 32.13 |
| TraesCSU01G069300.1 | Wheat | nucleus | 30.64 | 31.25 |
| CDY43542 | Canola | nucleus | 17.83 | 24.33 |
| CDX68608 | Canola | nucleus | 17.83 | 24.33 |
| CDY30182 | Canola | nucleus | 16.43 | 24.18 |
| CDY46719 | Canola | nucleus | 17.55 | 23.86 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 13.09 | 23.27 |
| CDY28529 | Canola | nucleus | 28.13 | 23.01 |
| CDY47924 | Canola | nucleus | 15.6 | 22.76 |
| CDY38270 | Canola | nucleus | 15.6 | 22.76 |
| CDY42237 | Canola | nucleus | 15.32 | 22.73 |
| CDY21073 | Canola | nucleus | 27.02 | 22.51 |
| CDY34601 | Canola | nucleus | 27.3 | 22.07 |
| CDY11882 | Canola | nucleus | 15.04 | 21.95 |
| CDX88610 | Canola | nucleus | 15.04 | 21.95 |
| CDY48974 | Canola | nucleus | 28.69 | 21.5 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 8.08 | 18.35 |
| CDY52738 | Canola | cytosol | 8.08 | 17.58 |
| CDY31199 | Canola | nucleus | 15.04 | 17.25 |
| CDY30505 | Canola | nucleus | 15.04 | 17.2 |
| CDX71377 | Canola | nucleus | 15.04 | 17.09 |
| CDX77160 | Canola | nucleus | 15.04 | 17.09 |
| CDY04543 | Canola | nucleus | 15.04 | 17.09 |
| CDX83286 | Canola | nucleus | 14.48 | 16.61 |
| CDY34878 | Canola | cytosol | 16.99 | 15.89 |
| CDY54227 | Canola | nucleus | 16.43 | 15.53 |
| CDX89760 | Canola | nucleus | 23.4 | 14.79 |
| CDY31399 | Canola | nucleus | 23.12 | 14.64 |
| CDX71316 | Canola | nucleus | 23.12 | 14.61 |
| CDY02227 | Canola | nucleus | 22.84 | 14.44 |
| CDY37964 | Canola | nucleus | 15.88 | 14.04 |
| CDX93399 | Canola | nucleus | 15.32 | 13.41 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078F6U8 | UniProt:A0A078F6U8 | EnsemblPlants:CDY08769 | ProteinID:CDY08769 |
| ProteinID:CDY08769.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00000704001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF6 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE4B5D | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g24550DBnaA06g24550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6U8]
Coordinates
chrLK031989:-:279997..282208
Molecular Weight (calculated)
40432.6 Da
IEP (calculated)
4.671
GRAVY (calculated)
-0.575
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MELSTQMNVF EELLVQTKQE TTDDINTNYN NLSFNGGFDH HHHPHQQLFP NGWNIDYLCF NNEEEDENTL LYSSSFMDLI SQPPPLLLHQ TPLLPPPSAS
101: SPPLTSSVAT TFDYPFLEAL QEIIDSSSPS PPLMLPTSQE DSFINPTSYP SPLMESDQSK SFSVGYCGGE TTNKKKSKKL EGQPSKNLMA ERRRRKRLND
201: RLSMLRSIVP KISKMDRTSI LGDAIDYMKE LLDKINKLQE EEQEFGNSNG SHHSKLFGDI KDLNTNEPMV RNSPKFEVDR RVVDTRVDIC CSPKPGLLLS
301: TVNTLETLGL EIEQCVISCF SDFSLQASCS EAAQQRDFIT SEDIKQALFR NAGYGGNCL
101: SPPLTSSVAT TFDYPFLEAL QEIIDSSSPS PPLMLPTSQE DSFINPTSYP SPLMESDQSK SFSVGYCGGE TTNKKKSKKL EGQPSKNLMA ERRRRKRLND
201: RLSMLRSIVP KISKMDRTSI LGDAIDYMKE LLDKINKLQE EEQEFGNSNG SHHSKLFGDI KDLNTNEPMV RNSPKFEVDR RVVDTRVDIC CSPKPGLLLS
301: TVNTLETLGL EIEQCVISCF SDFSLQASCS EAAQQRDFIT SEDIKQALFR NAGYGGNCL
001: MELSTQMNVF EELLVPTKQE TTDNNINNLS FNGGFDHHHH QFFPNGYNID YLCFNNEEED ENTLLYPSSF MDLISQPPPL LLHQPPPLQP LSPPLSSSAT
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
101: AGATFDYPFL EALQEIIDSS SSSPPLILQN GQEENFNNPM SYPSPLMESD QSKSFSVGYC GGETNKKKSK KLEGQPSKNL MAERRRRKRL NDRLSMLRSI
201: VPKISKMDRT SILGDAIDYM KELLDKINKL QDEEQELGNS NNSHHSKLFG DLKDLNANEP LVRNSPKFEI DRRDEDTRVD ICCSPKPGLL LSTVNTLETL
301: GLEIEQCVIS CFSDFSLQAS CSEGAEQRDF ITSEDIKQAL FRNAGYGGSC L
Arabidopsis Description
BHLH93Transcription factor bHLH93 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSL1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.