Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032947.1-P | Field mustard | nucleus | 90.81 | 98.42 |
| CDY28529 | Canola | nucleus | 83.3 | 90.89 |
| CDX98033 | Canola | nucleus | 33.4 | 86.49 |
| CDY19416 | Canola | nucleus | 33.19 | 85.95 |
| Bra025226.1-P | Field mustard | nucleus | 83.72 | 80.68 |
| GSMUA_Achr6P08070_001 | Banana | nucleus | 35.28 | 77.52 |
| AT3G26744.1 | Thale cress | nucleus | 79.54 | 77.13 |
| CDY21073 | Canola | nucleus | 54.7 | 60.79 |
| CDY34601 | Canola | nucleus | 55.74 | 60.14 |
| KRG94685 | Soybean | nucleus | 47.81 | 53.76 |
| VIT_14s0068g01200.t01 | Wine grape | nucleus | 59.08 | 52.6 |
| KRH06841 | Soybean | nucleus | 46.14 | 49.11 |
| KRH08406 | Soybean | nucleus | 44.47 | 47.97 |
| EES04142 | Sorghum | nucleus | 37.16 | 47.34 |
| TraesCS3B01G476000.1 | Wheat | nucleus | 37.16 | 46.97 |
| TraesCS3D01G434900.1 | Wheat | nucleus | 37.16 | 46.72 |
| HORVU3Hr1G096460.5 | Barley | nucleus | 36.53 | 46.17 |
| GSMUA_Achr10P... | Banana | nucleus | 49.06 | 46.17 |
| TraesCS3A01G442200.1 | Wheat | nucleus | 36.74 | 45.95 |
| Os01t0928000-01 | Rice | nucleus | 36.53 | 45.93 |
| Zm00001d042263_P001 | Maize | nucleus | 37.37 | 42.82 |
| Solyc03g118310.2.1 | Tomato | nucleus | 45.72 | 41.48 |
| PGSC0003DMT400036951 | Potato | nucleus | 46.14 | 40.11 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 7.31 | 35.0 |
| CDX97027 | Canola | nucleus | 17.95 | 28.86 |
| CDY69978 | Canola | nucleus | 21.5 | 28.77 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 12.11 | 28.71 |
| CDX69821 | Canola | nucleus | 18.16 | 28.71 |
| CDY08769 | Canola | nucleus | 21.5 | 28.69 |
| CDY37835 | Canola | nucleus | 21.29 | 28.49 |
| CDY38270 | Canola | nucleus | 11.69 | 22.76 |
| CDY47924 | Canola | nucleus | 11.27 | 21.95 |
| CDY42237 | Canola | nucleus | 11.06 | 21.9 |
| CDY30182 | Canola | nucleus | 11.06 | 21.72 |
| CDY11882 | Canola | nucleus | 10.86 | 21.14 |
| CDY46719 | Canola | nucleus | 11.27 | 20.45 |
| CDX88610 | Canola | nucleus | 10.44 | 20.33 |
| CDY43542 | Canola | nucleus | 11.06 | 20.15 |
| CDX68608 | Canola | nucleus | 10.86 | 19.77 |
| CDY52738 | Canola | cytosol | 6.47 | 18.79 |
| CDY30505 | Canola | nucleus | 11.9 | 18.15 |
| CDX77160 | Canola | nucleus | 11.9 | 18.04 |
| CDY04543 | Canola | nucleus | 11.9 | 18.04 |
| CDX71377 | Canola | nucleus | 11.69 | 17.72 |
| CDY31199 | Canola | nucleus | 10.86 | 16.61 |
| CDY31399 | Canola | nucleus | 19.42 | 16.4 |
| CDX83286 | Canola | nucleus | 10.65 | 16.29 |
| CDY02227 | Canola | nucleus | 19.21 | 16.2 |
| CDX71316 | Canola | nucleus | 19.21 | 16.2 |
| CDX89760 | Canola | nucleus | 18.79 | 15.85 |
| CDY54227 | Canola | nucleus | 11.48 | 14.47 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 4.59 | 13.92 |
| CDY34878 | Canola | cytosol | 10.65 | 13.28 |
| CDX93399 | Canola | nucleus | 11.06 | 12.93 |
| CDY37964 | Canola | nucleus | 10.86 | 12.81 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.4.3.4.1 | Gene3D:4.10.280.10 | GO:A0A078IHT8 | UniProt:A0A078IHT8 | EnsemblPlants:CDY48974 |
| ProteinID:CDY48974 | ProteinID:CDY48974.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010440 | GO:GO:0045893 |
| GO:GO:0046983 | GO:GO:0050826 | EnsemblPlantsGene:GSBRNA2T00092171001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF13 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0004EE375C | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
BnaA02g28220DBnaA02g28220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHT8]
Coordinates
chrLK032805:+:16241..18258
Molecular Weight (calculated)
51229.8 Da
IEP (calculated)
5.844
GRAVY (calculated)
-0.344
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIHMTYHIT INDGNEEKAK KVTRNLNCEK ALTVTMVLDG NGGGVWLGGG GGGESVHGEE DGAAQFKPML EGGDWFSNQP QELQSHHQDF RFLGGFAFNP
101: NDNLLLDSSS SQAFGLDMSH QPSFLAAADN KSCLLNVPSS ANPFDNAFEF GSDSGFLGHI QAPMGFGSLM QLSSVPELCG GGGGGGGFTP LESEGFGSLA
201: SGGFVGSRAK VLKPLEVLAS SGAQPTLFQK RAAMRQSSGR RKLSDDGEVD ETGVDVSGLN YESDELNESG KGAESVQNGG GGRGKKKGMP AKNLMAERRR
301: RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR INDLHNELES TPNGSLPLAS SSFHPLTPTP QTLSCRVKEE LCPSSLPSPK GQQARVEVRL
401: REGRAVNIHM FCGGRPGLLL ATMKALDNLG LDVQQAVISC FNGFALDVFR AEQCQEGQEI LPDQIKAVLF DTAGYAGMI
101: NDNLLLDSSS SQAFGLDMSH QPSFLAAADN KSCLLNVPSS ANPFDNAFEF GSDSGFLGHI QAPMGFGSLM QLSSVPELCG GGGGGGGFTP LESEGFGSLA
201: SGGFVGSRAK VLKPLEVLAS SGAQPTLFQK RAAMRQSSGR RKLSDDGEVD ETGVDVSGLN YESDELNESG KGAESVQNGG GGRGKKKGMP AKNLMAERRR
301: RKKLNDRLYM LRSVVPKISK MDRASILGDA IDYLKELLQR INDLHNELES TPNGSLPLAS SSFHPLTPTP QTLSCRVKEE LCPSSLPSPK GQQARVEVRL
401: REGRAVNIHM FCGGRPGLLL ATMKALDNLG LDVQQAVISC FNGFALDVFR AEQCQEGQEI LPDQIKAVLF DTAGYAGMI
001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI
Arabidopsis Description
SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.