Factsheet for Bra032947.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48974	Canola	nucleus	98.42	90.81
Bra025226.1-P	Field mustard	nucleus	91.4	81.29
AT3G26744.1	Thale cress	nucleus	86.65	77.53
GSMUA_Achr6P08070_001	Banana	nucleus	37.78	76.61
Bra034246.1-P	Field mustard	nucleus	67.65	71.53
Bra019794.1-P	Field mustard	nucleus	58.82	61.18
Bra016749.1-P	Field mustard	nucleus	58.6	59.82
KRG94685	Soybean	nucleus	51.36	53.29
VIT_14s0068g01200.t01	Wine grape	nucleus	63.57	52.23
KRH06841	Soybean	nucleus	49.77	48.89
KRH08406	Soybean	nucleus	48.19	47.97
EES04142	Sorghum	nucleus	39.82	46.81
TraesCS3B01G476000.1	Wheat	nucleus	39.82	46.44
TraesCS3D01G434900.1	Wheat	nucleus	39.82	46.19
GSMUA_Achr10P...	Banana	nucleus	52.71	45.78
HORVU3Hr1G096460.5	Barley	nucleus	39.14	45.65
TraesCS3A01G442200.1	Wheat	nucleus	39.37	45.43
Os01t0928000-01	Rice	nucleus	39.14	45.41
Zm00001d042263_P001	Maize	nucleus	40.05	42.34
Solyc03g118310.2.1	Tomato	nucleus	49.09	41.1
PGSC0003DMT400036951	Potato	nucleus	49.55	39.75
Bra009022.1-P	Field mustard	nucleus	19.68	28.71
Bra031852.1-P	Field mustard	nucleus	23.08	28.49
Bra024404.1-P	Field mustard	nucleus	23.08	28.41
Bra002756.1-P	Field mustard	nucleus	12.44	22.36
Bra020462.1-P	Field mustard	nucleus	11.99	21.54
Bra024115.1-P	Field mustard	nucleus	11.76	21.31
Bra006831.1-P	Field mustard	nucleus	11.09	19.92
Bra011152.1-P	Field mustard	nucleus	11.09	19.76
Bra011972.1-P	Field mustard	nucleus	13.12	18.35
Bra034392.1-P	Field mustard	nucleus	13.12	18.35
Bra000495.1-P	Field mustard	nucleus	11.76	16.88
Bra002004.1-P	Field mustard	nucleus	20.81	16.23
Bra013041.1-P	Field mustard	nucleus	20.59	16.02
Bra031723.1-P	Field mustard	cytosol	11.99	13.73
Bra019914.1-P	Field mustard	cytosol	12.67	13.43

Protein Annotations

MapMan:15.5.32	MapMan:26.4.3.4.1	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra032947	EnsemblPlants:Bra032947.1	EnsemblPlants:Bra032947.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4EVW4	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR31945
PANTHER:PTHR31945:SF13	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254598C	InterPro:bHLH_dom	SEG:seg

Description

AT3G26744 (E=1e-121) ICE1, ATICE1, SCRM | ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor

Coordinates

chrA02:+:22360160..22361755

Molecular Weight (calculated)

47252.0 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.341

Length

442 amino acids

Sequence
(BLAST)

001: MVLDGNGGGV WLGGGGGGGE RVHEEEDGAA QFKPMLEGGD WFSNQPQELQ SHHQDFRFLG GFAFNPNDNL LLDSSSSQAF GLDMSHQPSF LAAADNKSCL
101: LNVPSSANPF DNAFEFGSDS GFLGHIQAPM GFGSLMQLSS VPELCGGGGG FTPLETEGFG SLASGGFVGS RAKVLKPLEV LASSGAQPTL FQKRAAMRQS
201: SGRRKLSDDG EVDETGVEVS GLNYESDELN ESGKAAESVQ NGGGGRGKKK GMPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIDYLKEL
301: LQRINDLHNE LESTPNGSLP LASSSFHPLT PTPQTLSCRV KEELCPSSLP SPKGQQARVE VRLREGRAVN IHMFCGGRPG LLLATMKALD NLGLDVQQAV
401: ISCLNGFALD VFRAEQCQEG QEILPDQIKA VLFDTAGYAG MI

Best Arabidopsis Sequence Match ( AT3G26744.1 )
(BLAST)

001: MGLDGNNGGG VWLNGGGGER EENEEGSWGR NQEDGSSQFK PMLEGDWFSS NQPHPQDLQM LQNQPDFRYF GGFPFNPNDN LLLQHSIDSS SSCSPSQAFS
101: LDPSQQNQFL STNNNKGCLL NVPSSANPFD NAFEFGSESG FLNQIHAPIS MGFGSLTQLG NRDLSSVPDF LSARSLLAPE SNNNNTMLCG GFTAPLELEG
201: FGSPANGGFV GNRAKVLKPL EVLASSGAQP TLFQKRAAMR QSSGSKMGNS ESSGMRRFSD DGDMDETGIE VSGLNYESDE INESGKAAES VQIGGGGKGK
301: KKGMPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH NELESTPPGS LPPTSSSFHP LTPTPQTLSC RVKEELCPSS
401: LPSPKGQQAR VEVRLREGRA VNIHMFCGRR PGLLLATMKA LDNLGLDVQQ AVISCFNGFA LDVFRAEQCQ EGQEILPDQI KAVLFDTAGY AGMI

Arabidopsis Description

SCRMTranscription factor ICE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.