Factsheet for Bra013041.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02227	Canola	nucleus	99.82	99.82
Bra002004.1-P	Field mustard	nucleus	89.26	89.42
AT2G16910.1	Thale cress	nucleus	88.38	87.92
VIT_01s0127g00860.t01	Wine grape	nucleus	48.06	44.61
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	22.18	43.0
KRH36073	Soybean	nucleus	41.73	41.51
VIT_03s0038g02540.t01	Wine grape	nucleus	47.36	41.45
GSMUA_Achr3P00640_001	Banana	nucleus	20.77	39.6
KRG90676	Soybean	extracellular, vacuole	40.14	39.51
Solyc08g062780.1.1	Tomato	nucleus	40.67	38.76
PGSC0003DMT400021165	Potato	nucleus	28.35	37.01
Os02t0120500-01	Rice	nucleus	32.75	33.7
Bra031723.1-P	Field mustard	cytosol	22.54	33.16
TraesCS6B01G095700.1	Wheat	nucleus	31.51	32.37
TraesCS6A01G071300.1	Wheat	nucleus	31.34	32.36
TraesCS6D01G069400.1	Wheat	nucleus	31.34	32.13
HORVU6Hr1G012760.1	Barley	nucleus	31.51	32.08
HORVU6Hr1G012730.1	Barley	nucleus	31.51	32.08
Bra019914.1-P	Field mustard	cytosol	23.42	31.89
TraesCS6B01G095600.1	Wheat	nucleus	30.99	31.83
TraesCS6D01G069300.1	Wheat	nucleus	30.99	31.6
TraesCS6A01G071200.1	Wheat	nucleus	30.63	31.41
GSMUA_Achr1P07330_001	Banana	nucleus	23.06	31.04
KXG29315	Sorghum	nucleus	31.16	31.0
Zm00001d053895_P001	Maize	nucleus	29.93	27.2
Bra002756.1-P	Field mustard	nucleus	11.09	25.61
Bra020462.1-P	Field mustard	nucleus	10.74	24.8
Bra006831.1-P	Field mustard	nucleus	10.21	23.58
Bra011152.1-P	Field mustard	nucleus	10.21	23.39
Bra024115.1-P	Field mustard	nucleus	9.86	22.95
Bra031852.1-P	Field mustard	nucleus	14.44	22.91
Bra024404.1-P	Field mustard	nucleus	14.44	22.84
Bra009022.1-P	Field mustard	nucleus	11.97	22.44
Bra034246.1-P	Field mustard	nucleus	16.02	21.77
Bra034392.1-P	Field mustard	nucleus	11.97	21.52
Bra011972.1-P	Field mustard	nucleus	11.97	21.52
Bra000495.1-P	Field mustard	nucleus	11.62	21.43
Bra032947.1-P	Field mustard	nucleus	16.02	20.59
Bra016749.1-P	Field mustard	nucleus	15.49	20.32
Bra019794.1-P	Field mustard	nucleus	14.96	20.0
Bra025226.1-P	Field mustard	nucleus	16.73	19.11

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra013041	EnsemblPlants:Bra013041.1	EnsemblPlants:Bra013041.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4D981	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888
PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002540427	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT2G16910 (E=3e-263) AMS | AMS (ABORTED MICROSPORES); DNA binding / transcription factor

Coordinates

chrA03:+:20833699..20836005

Molecular Weight (calculated)

64495.6 Da

IEP (calculated)

4.979

GRAVY (calculated)

-0.742

Length

568 amino acids

Sequence
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTQLIE EAGTEEFSFG SCRDVMFHHP RTKSCEVLSH LPSSIPLDSG IYAETLLTNQ
101: TGWLTESSEP GFMQETICTR VLVPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMVGVEV ESKPYGMLLP GDIHQKGSSK DEEMMNLPSP
201: YDISADQIRL NFLPQMNDYE SQQHLKMKSD YDHHHQTLGY DLPENGNNMN PFNTVAEEGM SVMGEASLLV NEQQVGNDKE MNENATGSDC SDQIDDEDDP
301: KCKKKTGKHT QAKNLHAERR RRKKLNDRLY ALRSLVPRIT KLDRASILGD AINYVKELQN EAKELQDELE DNSETEDGSN RQQGGMSMNG TVLTGFHQGL
401: SCNSNLPDMK QDVDLENCND KGQEMEPQVD VAHLDGREFF VKVICEYKPG GFTRLMEALD SLGLEVTNAN TTRFLSLVSN VFKVEKNDSE MVPAEHVRNS
501: LLEITRNTSR GWHDDQMATG SIQNEKNEVG YQHYDDHHHH GGHHQLHDHQ MNQSAHHHHQ HINHYQNQ

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.