CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90676	Soybean	extracellular, vacuole	82.84	81.98
VIT_01s0127g00860.t01	Wine grape	nucleus	51.66	48.2
VIT_03s0038g02540.t01	Wine grape	nucleus	51.66	45.45
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	22.59	44.03
AT2G16910.1	Thale cress	nucleus	43.43	43.43
Solyc08g062780.1.1	Tomato	nucleus	44.83	42.95
CDY31399	Canola	nucleus	42.38	42.68
Bra002004.1-P	Field mustard	nucleus	42.21	42.5
GSMUA_Achr3P00640_001	Banana	nucleus	22.07	42.28
CDX71316	Canola	nucleus	41.86	42.08
Bra013041.1-P	Field mustard	nucleus	41.51	41.73
CDY02227	Canola	nucleus	41.51	41.73
CDX89760	Canola	nucleus	41.16	41.37
PGSC0003DMT400021165	Potato	nucleus	31.35	41.15
KRH41065	Soybean	nucleus	8.93	36.69
Os02t0120500-01	Rice	nucleus	32.75	33.88
TraesCS6B01G095600.1	Wheat	nucleus	31.52	32.55
TraesCS6A01G071300.1	Wheat	nucleus	31.35	32.55
GSMUA_Achr1P07330_001	Banana	nucleus	23.99	32.46
TraesCS6D01G069400.1	Wheat	nucleus	31.35	32.31
TraesCS6D01G069300.1	Wheat	nucleus	31.35	32.14
HORVU6Hr1G012760.1	Barley	nucleus	31.35	32.08
HORVU6Hr1G012730.1	Barley	nucleus	31.35	32.08
TraesCS6B01G095700.1	Wheat	nucleus	31.0	32.01
TraesCS6A01G071200.1	Wheat	nucleus	30.65	31.59
KRH73107	Soybean	mitochondrion, nucleus	8.58	30.06
KXG29315	Sorghum	nucleus	29.95	29.95
KRH45665	Soybean	nucleus	25.04	28.83
KRH37338	Soybean	nucleus	12.26	28.69
KRH19109	Soybean	nucleus	11.38	28.14
KRH12334	Soybean	nucleus	11.56	27.16
Zm00001d053895_P001	Maize	nucleus	29.6	27.04
KRH62159	Soybean	nucleus	13.84	23.94
KRH16156	Soybean	nucleus	11.38	23.9
KRH45479	Soybean	nucleus	13.13	23.44
KRH39520	Soybean	nucleus	13.49	23.12
KRH74438	Soybean	nucleus	13.31	22.75
KRH52870	Soybean	nucleus	12.96	22.36
KRH72519	Soybean	nucleus	12.78	21.92
KRH16909	Soybean	nucleus	12.61	21.43
KRH22827	Soybean	nucleus	11.91	21.05
KRH08406	Soybean	nucleus	16.29	20.95
KRG94685	Soybean	nucleus	15.59	20.89
KRH63854	Soybean	nucleus	16.99	20.86
KRH54112	Soybean	nucleus	16.81	20.78
KRH06841	Soybean	nucleus	16.29	20.67
KRH26533	Soybean	nucleus	11.56	20.5
KRG99605	Soybean	cytosol	5.6	20.25
KRH30560	Soybean	nucleus	10.86	19.87
KRH25108	Soybean	nucleus	9.63	19.3
KRH02772	Soybean	nucleus	11.38	19.12
KRH59747	Soybean	nucleus	16.11	19.05

Protein Annotations

EntrezGene:100798282	MapMan:15.5.32	Gene3D:4.10.280.10	InterPro:ACT_dom	EMBL:ACUP02006719	ncoils:Coil
EnsemblPlantsGene:GLYMA_10G281800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
UniProt:I1LF47	InterPro:IPR002912	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH36073	ProteinID:KRH36073
ProteinID:KRH36073.1	InterPro:MYC/MYB_N	PFAM:PF00010	PFAM:PF14215	PFscan:PS50888	PFscan:PS51671
PANTHER:PTHR31945	PANTHER:PTHR31945:SF11	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233D215	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:50284138..50287875

Molecular Weight (calculated)

64919.4 Da

IEP (calculated)

4.849

GRAVY (calculated)

-0.802

Length

571 amino acids

Sequence
(BLAST)

001: MNISMQHLVE RLRPLVGLNG WDYCIYWKLS EDQRFLEWLG CCCAGTESNQ NAGEEHLFPV SSVASCRDIT YPHPRTKPCD LLSQLSTCIP IDNSGIHAQT
101: LLTNQPNWVN YSNGMDPNIL EETIGTQVLI SVPGGLVELF VTKQVSEDHQ LIDFVTNQCI EAVNHSMSFN IDVSNMQSNP LIQDENEGNN NRNNNHLFHP
201: SEHVITDMDH RNIGLCNSQL NFMQQFNYNQ HNRMKSDAAF SEEYQAGNSF LHDEQTNPED DQEPGHEHDT YQKSLMTTDS QYVEAKDQKQ EEDKDLMKNV
301: VGRSDSMSDC SDQNEEEELD GKYRRRNGKG NQSKNLVAER KRRKKLNDRL YNLRSLVPRI SKLDRASILG DAIEYVKDLQ KQVKELQDEL EENADTESNC
401: MNIGVGAELG PNAEHDKAQT GLHVGTSGNG YVSKQKQEGA TVIDKQTQQM EPQVEVALID ENEYFVKVFC EHRPGGFVKL MEALNTIGMD VVHATVTSHT
501: GLVSNVFKVE KKDNETVEAE DVRDSLLELT RNRYRGWTHE MTATPENGVG RDQHQLHNHQ QIGAYPHQFH S

Best Arabidopsis Sequence Match ( AT2G16910.1 )
(BLAST)

001: MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ
101: TGWLSESSEP SFMQETICTR VLIPIPGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDDSV TINMMVADEV ESKPYGMLSG DIQQKGSKEE DMMNLPSSYD
201: ISADQIRLNF LPQMSDYETQ HLKMKSDYHH QALGYLPENG NKEMMGMNPF NTVEEDGIPV IGEPSLLVNE QQVVNDKDMN ENGRVDSGSD CSDQIDDEDD
301: PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG
401: LSCNSNVPSV KQDVDLENSN DKGQEMEPQV DVAQLDGREF FVKVICEYKP GGFTRLMEAL DSLGLEVTNA NTTRYLSLVS NVFKVEKNDN EMVQAEHVRN
501: SLLEITRNTS RGWQDDQMAT GSMQNEKNEV DYQHYDDHQH HNGHHHPFDH QMNQSAHHHH HHQHINHYHN Q

Arabidopsis Description

AMSTranscription factor ABORTED MICROSPORES [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.