Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH30560 | Soybean | nucleus | 80.35 | 73.4 |
| KRH22827 | Soybean | nucleus | 64.21 | 56.66 |
| KRH26533 | Soybean | nucleus | 62.46 | 55.28 |
| AT2G28160.1 | Thale cress | nucleus | 50.18 | 44.97 |
| Bra011972.1-P | Field mustard | nucleus | 49.47 | 44.62 |
| CDX77160 | Canola | nucleus | 49.12 | 44.3 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 48.77 | 44.27 |
| Bra034392.1-P | Field mustard | nucleus | 48.77 | 43.99 |
| CDY04543 | Canola | nucleus | 48.77 | 43.99 |
| CDY30505 | Canola | nucleus | 48.42 | 43.95 |
| CDX71377 | Canola | nucleus | 48.42 | 43.67 |
| CDY31199 | Canola | nucleus | 47.72 | 43.45 |
| Bra000495.1-P | Field mustard | nucleus | 46.67 | 43.18 |
| CDX83286 | Canola | nucleus | 47.37 | 43.13 |
| PGSC0003DMT400048941 | Potato | nucleus | 41.75 | 38.14 |
| Solyc06g051550.2.1 | Tomato | cytosol | 39.65 | 37.17 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 30.88 | 28.95 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 30.53 | 25.74 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 27.37 | 25.49 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 30.53 | 25.36 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 29.82 | 25.07 |
| Os04t0381700-00 | Rice | nucleus | 29.47 | 23.86 |
| KRH19109 | Soybean | nucleus | 19.3 | 23.81 |
| KXG26070 | Sorghum | nucleus | 29.82 | 23.22 |
| KRH41065 | Soybean | nucleus | 11.23 | 23.02 |
| KRH12334 | Soybean | nucleus | 19.3 | 22.63 |
| KRH37338 | Soybean | nucleus | 19.3 | 22.54 |
| Zm00001d004007_P001 | Maize | nucleus | 28.07 | 22.35 |
| Zm00001d025205_P001 | Maize | nucleus | 29.82 | 22.31 |
| KRH73107 | Soybean | mitochondrion, nucleus | 12.28 | 21.47 |
| KRH45479 | Soybean | nucleus | 19.65 | 17.5 |
| KRH62159 | Soybean | nucleus | 19.65 | 16.97 |
| KRH02772 | Soybean | nucleus | 19.65 | 16.47 |
| KRH74438 | Soybean | nucleus | 19.3 | 16.47 |
| KRG99605 | Soybean | cytosol | 9.12 | 16.46 |
| KRH52870 | Soybean | nucleus | 18.95 | 16.31 |
| KRH16909 | Soybean | nucleus | 18.95 | 16.07 |
| KRH39520 | Soybean | nucleus | 18.25 | 15.62 |
| KRH16156 | Soybean | nucleus | 14.74 | 15.44 |
| KRH72519 | Soybean | nucleus | 17.89 | 15.32 |
| KRH54112 | Soybean | nucleus | 21.05 | 12.99 |
| KRG94685 | Soybean | nucleus | 19.3 | 12.91 |
| KRH59747 | Soybean | nucleus | 21.4 | 12.63 |
| KRH63854 | Soybean | nucleus | 20.35 | 12.47 |
| KRH08406 | Soybean | nucleus | 18.95 | 12.16 |
| KRH45665 | Soybean | nucleus | 20.7 | 11.9 |
| KRH06841 | Soybean | nucleus | 18.25 | 11.56 |
| KRH36073 | Soybean | nucleus | 19.3 | 9.63 |
| KRG90676 | Soybean | extracellular, vacuole | 18.6 | 9.19 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02007206 | ncoils:Coil | EnsemblPlantsGene:GLYMA_12G081200 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | UniProt:I1LR92 | InterPro:IPR011598 |
| InterPro:IPR036638 | EnsemblPlants:KRH25108 | ProteinID:KRH25108 | ProteinID:KRH25108.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296DADC | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr12:+:6419681..6420995
Molecular Weight (calculated)
32018.7 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.447
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFHQDPLVH IKDFEVHDFV EDPNLDQFID LIRWEHKDAI YNFNSKSINE AFIVDNSFLS HPAIPFDHCN SNSVNVYHPI SYTHSSFSCF DGEAKEEGGG
101: EEDNMGDSSA TTTTTTTTTK SVNPKPIPKT DRSKTLISER RRRDRMKQKL YALWSLVPNI TKMDKASIIG DAVSYMHELQ AQANMLKAEV QGLETSLLDN
201: RSICKKIIKM DMFQVDEKGF YVKIVCNKGE GVAASLCKSL ESLTGFNVQS SNLATVSDSF QLTFSLNAKG PEPEFNLPNL EVMGD
101: EEDNMGDSSA TTTTTTTTTK SVNPKPIPKT DRSKTLISER RRRDRMKQKL YALWSLVPNI TKMDKASIIG DAVSYMHELQ AQANMLKAEV QGLETSLLDN
201: RSICKKIIKM DMFQVDEKGF YVKIVCNKGE GVAASLCKSL ESLTGFNVQS SNLATVSDSF QLTFSLNAKG PEPEFNLPNL EVMGD
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG L
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG L
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.