Factsheet for GSMUA_Achr6P27600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P27600_001
GSMUA_Achr8P22120_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28160.1	GSMUA_Achr6P27600_001	AT2G28160.1	18268542
AT2G28160.1	GSMUA_Achr8P22120_001	AT3G56970.1	18268542
AT2G28160.1	GSMUA_AchrUn_...	AT3G56970.1	18268542
AT2G28160.1	GSMUA_Achr8P22120_001	AT3G56980.1	18268542
AT2G28160.1	GSMUA_AchrUn_...	AT3G56980.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0381700-00	Rice	nucleus	45.39	39.2
TraesCS2A01G281200.1	Wheat	nucleus	43.42	39.05
TraesCS2D01G280100.1	Wheat	nucleus	43.42	38.94
TraesCS2B01G298600.1	Wheat	nucleus	43.75	38.78
Zm00001d004007_P001	Maize	nucleus	45.39	38.55
KXG26070	Sorghum	nucleus	45.39	37.7
HORVU2Hr1G068960.2	Barley	nucleus	37.83	37.58
Zm00001d025205_P001	Maize	nucleus	45.07	35.96
GSMUA_Achr10P...	Banana	nucleus	15.46	34.31
VIT_06s0061g00720.t01	Wine grape	nucleus	34.54	33.44
Solyc06g051550.2.1	Tomato	cytosol	32.24	32.24
KRH22827	Soybean	nucleus	33.88	31.89
PGSC0003DMT400048941	Potato	nucleus	32.57	31.73
CDY31199	Canola	nucleus	32.24	31.31
Bra000495.1-P	Field mustard	nucleus	31.58	31.17
AT2G28160.1	Thale cress	nucleus	32.57	31.13
KRH25108	Soybean	nucleus	28.95	30.88
CDY04543	Canola	nucleus	31.91	30.7
CDX83286	Canola	nucleus	31.58	30.67
KRH26533	Soybean	nucleus	32.24	30.43
CDX71377	Canola	nucleus	31.58	30.38
KRH30560	Soybean	nucleus	30.92	30.13
Bra011972.1-P	Field mustard	nucleus	31.25	30.06
CDY30505	Canola	nucleus	30.92	29.94
Bra034392.1-P	Field mustard	nucleus	30.92	29.75
CDX77160	Canola	nucleus	30.59	29.43
GSMUA_Achr6P30900_001	Banana	nucleus	16.12	23.33
GSMUA_Achr6P08070_001	Banana	nucleus	15.46	21.56
GSMUA_Achr7P16000_001	Banana	nucleus	18.09	21.15
GSMUA_AchrUn_...	Banana	nucleus	16.12	20.68
GSMUA_Achr1P26300_001	Banana	nucleus	16.12	20.5
GSMUA_Achr4P12700_001	Banana	nucleus	19.74	20.34
GSMUA_Achr7P03930_001	Banana	nucleus	15.79	20.25
GSMUA_Achr8P34120_001	Banana	nucleus	16.45	17.48
GSMUA_Achr1P07450_001	Banana	nucleus, plastid	16.78	17.41
GSMUA_Achr3P00640_001	Banana	nucleus	16.78	17.11
GSMUA_Achr1P07330_001	Banana	nucleus	17.76	12.8
GSMUA_Achr10P...	Banana	nucleus	20.07	11.82
GSMUA_Achr11P...	Banana	nucleus	19.08	11.03
GSMUA_Achr10P...	Banana	nucleus	18.09	10.81
GSMUA_Achr6P08060_001	Banana	nucleus	10.86	8.71
GSMUA_AchrUn_...	Banana	nucleus	8.55	7.85

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.5	Gene3D:4.10.280.10	ncoils:Coil	InterPro:Cyt_c-like_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006091	GO:GO:0006810	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009719	GO:GO:0009987	GO:GO:0010039
GO:GO:0020037	GO:GO:0022900	GO:GO:0034756	GO:GO:0046872	GO:GO:0046983	GO:GO:0071281
GO:GO:0071369	GO:GO:0071732	EnsemblPlantsGene:GSMUA_Achr6G27600_001	EnsemblPlants:GSMUA_Achr6P27600_001	EnsemblPlants:GSMUA_Achr6T27600_001	InterPro:HLH_DNA-bd_sf
InterPro:IPR009056	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0TAQ5	PFAM:PF00010	PFscan:PS50888
PFscan:PS51007	PANTHER:PTHR31945	PANTHER:PTHR31945:SF17	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002969684
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G27600_001]

Coordinates

chr6:+:28067227..28068308

Molecular Weight (calculated)

33262.2 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.360

Length

304 amino acids

Sequence
(BLAST)

001: MESDHPFLFA PQARISNEDD GFDPVFESYD HELLQFMLFD GGFAGDGHLS LLREGALFDA GGHEGTTATQ YLQADAPSGS PDLSLEVDDD PPACGGCHDG
101: GDSPGGITKT RRDRSKTLIS ERKRRVRMKE KLYELRSLVP NITKMDKASI IADAVVYMKN LQSQAKKLEE EVSMLESSSR EGQPLQVPSR KTTKATDLEE
201: AAAVRGGNIM QVNAFEVGEG RFYVKVEGSM GDGAASSLYA AVESLLCFDL ESSNFSLNPN GFVFTLTFKI GDFSREMNAS SMELWVMGAL LREGFQLMQT
301: TPPL

Best Arabidopsis Sequence Match ( AT2G28160.1 )
(BLAST)

001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT

Arabidopsis Description

FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.