Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83286 | Canola | nucleus | 98.72 | 98.72 |
| AT2G28160.1 | Thale cress | nucleus | 85.94 | 84.59 |
| CDY04543 | Canola | nucleus | 83.39 | 82.59 |
| CDX71377 | Canola | nucleus | 82.75 | 81.96 |
| CDX77160 | Canola | nucleus | 81.47 | 80.7 |
| CDY30505 | Canola | nucleus | 80.51 | 80.25 |
| KRH22827 | Soybean | nucleus | 52.08 | 50.46 |
| VIT_06s0061g00720.t01 | Wine grape | nucleus | 48.88 | 48.73 |
| KRH25108 | Soybean | nucleus | 43.45 | 47.72 |
| KRH26533 | Soybean | nucleus | 48.88 | 47.52 |
| Solyc06g051550.2.1 | Tomato | cytosol | 45.37 | 46.71 |
| PGSC0003DMT400048941 | Potato | nucleus | 46.33 | 46.47 |
| KRH30560 | Soybean | nucleus | 45.69 | 45.83 |
| GSMUA_Achr6P27600_001 | Banana | nucleus | 31.31 | 32.24 |
| HORVU2Hr1G068960.2 | Barley | nucleus | 29.07 | 29.74 |
| TraesCS2A01G281200.1 | Wheat | nucleus | 31.63 | 29.29 |
| TraesCS2D01G280100.1 | Wheat | nucleus | 31.31 | 28.91 |
| TraesCS2B01G298600.1 | Wheat | nucleus | 31.63 | 28.86 |
| Zm00001d004007_P001 | Maize | nucleus | 32.27 | 28.21 |
| Os04t0381700-00 | Rice | nucleus | 31.31 | 27.84 |
| KXG26070 | Sorghum | nucleus | 31.95 | 27.32 |
| CDY43542 | Canola | nucleus | 21.73 | 25.86 |
| CDY42237 | Canola | nucleus | 19.81 | 25.62 |
| CDX98033 | Canola | nucleus | 15.02 | 25.41 |
| CDY47924 | Canola | nucleus | 19.81 | 25.2 |
| Zm00001d025205_P001 | Maize | nucleus | 30.67 | 25.2 |
| CDX68608 | Canola | nucleus | 21.09 | 25.1 |
| CDY46719 | Canola | nucleus | 21.09 | 25.0 |
| CDY30182 | Canola | nucleus | 19.49 | 25.0 |
| CDY19416 | Canola | nucleus | 14.7 | 24.86 |
| CDY38270 | Canola | nucleus | 19.49 | 24.8 |
| CDX88610 | Canola | nucleus | 19.17 | 24.39 |
| CDY52738 | Canola | cytosol | 12.46 | 23.64 |
| CDY11882 | Canola | nucleus | 18.21 | 23.17 |
| CDY03557 | Canola | cytosol, nucleus, plastid | 9.58 | 18.99 |
| CDX97027 | Canola | nucleus | 16.61 | 17.45 |
| CDX69821 | Canola | nucleus | 16.61 | 17.16 |
| CDX97028 | Canola | cytosol, plastid, vacuole | 5.11 | 16.0 |
| CDY69978 | Canola | nucleus | 18.21 | 15.92 |
| CDY37835 | Canola | nucleus | 17.89 | 15.64 |
| CDY08769 | Canola | nucleus | 17.25 | 15.04 |
| CDY54227 | Canola | nucleus | 18.21 | 15.0 |
| CDY34878 | Canola | cytosol | 18.21 | 14.84 |
| CDX99537 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 9.27 | 14.36 |
| CDX93399 | Canola | nucleus | 18.53 | 14.15 |
| CDY37964 | Canola | nucleus | 17.89 | 13.79 |
| CDY21073 | Canola | nucleus | 17.89 | 12.99 |
| CDY34601 | Canola | nucleus | 17.89 | 12.61 |
| CDY31399 | Canola | nucleus | 22.04 | 12.17 |
| CDX71316 | Canola | nucleus | 22.04 | 12.15 |
| CDY28529 | Canola | nucleus | 16.93 | 12.07 |
| CDY02227 | Canola | nucleus | 21.41 | 11.8 |
| CDX89760 | Canola | nucleus | 21.41 | 11.8 |
| CDY48974 | Canola | nucleus | 16.61 | 10.86 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.5 | Gene3D:4.10.280.10 | GO:A0A078H179 | UniProt:A0A078H179 | EnsemblPlants:CDY31199 |
| ProteinID:CDY31199 | ProteinID:CDY31199.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00047327001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR31945 | PANTHER:PTHR31945:SF17 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EB293B |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC03g46920DBnaC03g46920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H179]
Coordinates
chrLK032268:+:387908..389216
Molecular Weight (calculated)
34666.5 Da
IEP (calculated)
4.787
GRAVY (calculated)
-0.487
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTVNVLSN LSDIELHNFL VDPNFDQFIN LIRGDDQTNK NPSLDFDLGG PFQNSPSFVD ENHFIPSHVN DLFDELPDLD SNVAESFRSL DAESVKAGGD
101: DDYNDCDDSS ATTTHTDGSR KTRTDRSKTL ISERKRRGRM KDKLYALRAL VPNITKMDKA SIVGDAVAYV QELQSQAKKL KADIAGLEAS LNSTGGYQEP
201: APDAHKTRRG LNPPVSKKII QMDVIQVEEK GFYVRLVCNK GVGVAPSLYK SLESLSSFEV QNSNLSSHSP DTYLLTYTLD GTCFEQSLNL PNLKLWITGS
301: LLNQGFEFVK AFT
101: DDYNDCDDSS ATTTHTDGSR KTRTDRSKTL ISERKRRGRM KDKLYALRAL VPNITKMDKA SIVGDAVAYV QELQSQAKKL KADIAGLEAS LNSTGGYQEP
201: APDAHKTRRG LNPPVSKKII QMDVIQVEEK GFYVRLVCNK GVGVAPSLYK SLESLSSFEV QNSNLSSHSP DTYLLTYTLD GTCFEQSLNL PNLKLWITGS
301: LLNQGFEFVK AFT
001: MEGRVNALSN INDLELHNFL VDPNFDQFIN LIRGDHQTID ENPVLDFDLG PLQNSPCFID ENQFIPTPVD DLFDELPDLD SNVAESFRSF DGDSVRAGGE
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
101: EDEEDYNDGD DSSATTTNND GTRKTKTDRS RTLISERRRR GRMKDKLYAL RSLVPNITKM DKASIVGDAV LYVQELQSQA KKLKSDIAGL EASLNSTGGY
201: QEHAPDAQKT QPFRGINPPA SKKIIQMDVI QVEEKGFYVR LVCNKGEGVA PSLYKSLESL TSFQVQNSNL SSPSPDTYLL TYTLDGTCFE QSLNLPNLKL
301: WITGSLLNQG FEFIKSFT
Arabidopsis Description
FITTranscription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Source:UniProtKB/Swiss-Prot;Acc:Q0V7X4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.