CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06147	Canola	nucleus	94.82	94.82
CDX77489	Canola	cytosol, nucleus, plastid	73.71	75.2
CDX72086	Canola	nucleus	70.12	74.58
CDX85121	Canola	nucleus	72.51	73.98
CDY06148	Canola	nucleus	73.31	73.9
CDY71118	Canola	nucleus	72.51	73.39
CDX77490	Canola	nucleus	71.31	72.18
CDY71388	Canola	cytosol	72.11	72.11
CDY06149	Canola	nucleus	70.52	71.08
CDX67670	Canola	nucleus	67.73	68.27
CDX76026	Canola	nucleus	66.14	66.94
CDY47394	Canola	nucleus	67.73	66.67
CDX67671	Canola	nucleus	66.14	66.67
CDY47392	Canola	nucleus	67.33	66.02
CDX76025	Canola	nucleus	67.33	66.02
CDY68089	Canola	nucleus	65.34	65.34
CDY69684	Canola	nucleus	64.94	64.94
CDY47395	Canola	nucleus	56.97	64.71
AT3G56980.1	Thale cress	nucleus	66.14	64.34
CDX76031	Canola	nucleus	63.35	63.35
CDX76027	Canola	nucleus	49.8	54.35
CDX76023	Canola	cytosol	5.98	53.57
CDY47396	Canola	mitochondrion	60.16	51.19
CDY06938	Canola	nucleus	47.81	50.42
CDY14758	Canola	nucleus	46.61	49.16
CDX76032	Canola	cytosol	43.82	49.11
CDX97997	Canola	nucleus	47.01	48.56
CDY72354	Canola	nucleus	47.01	48.56
CDY23861	Canola	cytosol, plastid	25.1	45.0
VIT_13s0047g00450.t01	Wine grape	nucleus	34.26	38.22
VIT_08s0007g05300.t01	Wine grape	nucleus	35.86	36.73
KRG95137	Soybean	cytosol, nucleus, plastid	16.73	35.9
PGSC0003DMT400076759	Potato	nucleus	25.5	35.56
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	32.67	34.02
KRH66812	Soybean	cytosol, nucleus, plastid	32.67	34.02
KRH66814	Soybean	nucleus	31.87	33.2
Solyc10g079680.1.1	Tomato	nucleus	25.5	33.16
Zm00001d042062_P001	Maize	nucleus	27.89	31.53
Zm00001d011847_P001	Maize	nucleus	27.09	29.69
KXG34133	Sorghum	nucleus	28.29	29.1
TraesCS3B01G549700.1	Wheat	nucleus	23.9	28.71
PGSC0003DMT400076775	Potato	cytosol	11.95	28.57
GSMUA_Achr8P22120_001	Banana	nucleus	27.09	28.33
TraesCS2B01G543700.1	Wheat	nucleus	27.09	27.87
HORVU2Hr1G114070.1	Barley	nucleus	27.89	27.67
HORVU3Hr1G108680.1	Barley	nucleus	27.09	27.64
TraesCS3D01G495700.1	Wheat	nucleus	27.09	27.53
TraesCS3D01G495400.1	Wheat	nucleus	25.9	27.31
Solyc10g079650.1.1	Tomato	nucleus	27.09	27.2
TraesCS3A01G489700.1	Wheat	nucleus	26.69	27.13
TraesCS3B01G550200.2	Wheat	nucleus	26.69	27.13
Os01t0952800-01	Rice	nucleus	26.69	27.13
TraesCS2D01G517000.1	Wheat	nucleus	27.09	26.88
TraesCS2A01G515300.1	Wheat	nucleus	27.09	26.88
TraesCS3B01G549800.1	Wheat	nucleus	25.1	26.47
TraesCS2B01G543800.1	Wheat	nucleus	26.29	26.4
GSMUA_AchrUn_...	Banana	nucleus	25.9	26.32
TraesCS3A01G489400.1	Wheat	nucleus	24.3	26.29
HORVU3Hr1G108660.1	Barley	nucleus	24.3	26.29
TraesCS3A01G489500.1	Wheat	nucleus	24.7	26.05
TraesCS7B01G321400.1	Wheat	nucleus	25.5	25.7
TraesCS3D01G495300.1	Wheat	nucleus	23.9	25.64
TraesCS7A01G421000.1	Wheat	nucleus	25.9	25.59
HORVU3Hr1G108670.2	Barley	nucleus	24.3	25.42
TraesCS3D01G495600.1	Wheat	nucleus	24.7	25.31
TraesCS3A01G489600.1	Wheat	nucleus	24.3	24.9
TraesCS3B01G550000.1	Wheat	nucleus	24.3	24.9
CDX80905	Canola	nucleus	30.68	19.79
Solyc10g079660.1.1	Tomato	nucleus	30.68	11.05

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078C5H2	EnsemblPlants:CDX72085
ProteinID:CDX72085	ProteinID:CDX72085.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00155884001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE8276	InterPro:bHLH_dom	:	:

Description

BnaC08g27890D

Coordinates

chrLK031795:+:2276009..2277520

Molecular Weight (calculated)

28997.6 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.411

Length

251 amino acids

Sequence
(BLAST)

001: MHALGHTFFP NFGRESTGVY ESYNIVRDNH NNGTFLDFPV PNMYGVVHHQ TSLVDSVSSE GNGIDNNLVV MKKLNHNANE RNRRKKINSL FSSLRSYLPD
101: SDELKKLSIP KTVSRSVQYI TELKEQANKL RQKKDDLLVR VLVQKERYVQ PQPKVIASYV SIVFATKLRD NEVMVQISSS KIHNFSIYNV LSGLEEDGFL
201: IVDVSFLSSQ GERIFYTLHL QLDKFDNYKL ICEELSQRIL YLYEKFGYSS K

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.