Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016946.1-P | Field mustard | nucleus | 97.48 | 97.48 |
| CDY14758 | Canola | nucleus | 95.8 | 95.8 |
| CDY72354 | Canola | nucleus | 80.67 | 79.01 |
| CDX97997 | Canola | nucleus | 80.67 | 79.01 |
| CDY23861 | Canola | cytosol, plastid | 44.96 | 76.43 |
| AT2G41240.1 | Thale cress | nucleus | 68.49 | 67.36 |
| CDX76026 | Canola | nucleus | 57.14 | 54.84 |
| CDX76025 | Canola | nucleus | 57.56 | 53.52 |
| CDY47392 | Canola | nucleus | 57.56 | 53.52 |
| CDY68089 | Canola | nucleus | 56.3 | 53.39 |
| CDY47394 | Canola | nucleus | 57.14 | 53.33 |
| CDY69684 | Canola | nucleus | 55.88 | 52.99 |
| CDX76031 | Canola | nucleus | 54.62 | 51.79 |
| CDY47395 | Canola | nucleus | 47.9 | 51.58 |
| CDX85121 | Canola | nucleus | 52.94 | 51.22 |
| CDY06148 | Canola | nucleus | 52.94 | 50.6 |
| CDY71388 | Canola | cytosol | 52.94 | 50.2 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 51.68 | 50.0 |
| CDX72086 | Canola | nucleus | 48.74 | 49.15 |
| CDY06149 | Canola | nucleus | 51.26 | 49.0 |
| CDX77490 | Canola | nucleus | 50.0 | 47.98 |
| CDY71118 | Canola | nucleus | 50.0 | 47.98 |
| CDY06147 | Canola | nucleus | 50.42 | 47.81 |
| CDX72085 | Canola | nucleus | 50.42 | 47.81 |
| CDX67670 | Canola | nucleus | 49.58 | 47.39 |
| CDX76027 | Canola | nucleus | 44.54 | 46.09 |
| CDX67671 | Canola | nucleus | 47.48 | 45.38 |
| CDX76023 | Canola | cytosol | 5.04 | 42.86 |
| CDY47396 | Canola | mitochondrion | 52.52 | 42.37 |
| CDX76032 | Canola | cytosol | 38.24 | 40.62 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 36.55 | 38.67 |
| PGSC0003DMT400076759 | Potato | nucleus | 28.15 | 37.22 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 37.82 | 36.73 |
| KRH66814 | Soybean | nucleus | 36.97 | 36.51 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 17.65 | 35.9 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 36.13 | 35.68 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 35.71 | 35.27 |
| Solyc10g079680.1.1 | Tomato | nucleus | 28.15 | 34.72 |
| Zm00001d011847_P001 | Maize | nucleus | 29.41 | 30.57 |
| Solyc10g079650.1.1 | Tomato | nucleus | 31.93 | 30.4 |
| PGSC0003DMT400076775 | Potato | cytosol | 13.03 | 29.52 |
| Zm00001d042062_P001 | Maize | nucleus | 27.31 | 29.28 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 30.67 | 29.2 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 29.83 | 29.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.83 | 28.74 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 30.25 | 28.46 |
| Os01t0952800-01 | Rice | nucleus | 29.41 | 28.34 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 29.41 | 28.11 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 28.99 | 27.94 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 28.99 | 27.94 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 28.99 | 27.94 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 24.37 | 27.75 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 29.41 | 27.67 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 29.41 | 27.56 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 27.73 | 27.5 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 28.99 | 27.27 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 28.15 | 27.24 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 27.73 | 26.94 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 27.73 | 26.94 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 26.89 | 26.89 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 26.89 | 26.89 |
| KXG34133 | Sorghum | nucleus | 27.31 | 26.64 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 27.31 | 26.53 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 26.47 | 26.47 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 25.63 | 26.29 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 26.47 | 26.25 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 25.21 | 25.86 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 24.79 | 25.21 |
| CDX80905 | Canola | nucleus | 32.35 | 19.79 |
| Solyc10g079660.1.1 | Tomato | nucleus | 34.03 | 11.62 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | GO:A0A078F5I5 | EnsemblPlants:CDY06938 |
| ProteinID:CDY06938 | ProteinID:CDY06938.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00123239001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0004EDDAA8 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BnaA04g23770D
Coordinates
chrLK031974:+:295233..296049
Molecular Weight (calculated)
26589.8 Da
IEP (calculated)
6.901
GRAVY (calculated)
-0.333
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MCALVPPLFP NFGWPCGDQG FYVNDDVANT FLDFPLPDLE VAHQNVSSER HRTLGLENPV VMKKLNHNAS ERGRRKKINA MFSALRSCLP STNQSKKLSV
101: SATVSQALEY IPELQEQFNM LIKKKDELSF RISGQKDLLN TNQNAKPEKG VTGYASTVSA TNLGETGLMV QISSLQTVKC SFGNVLSGLE EDGLVLVDAS
201: SSRSQGERLF YTLHLQMDNC NLNFEELRSR LLYLYEKC
101: SATVSQALEY IPELQEQFNM LIKKKDELSF RISGQKDLLN TNQNAKPEKG VTGYASTVSA TNLGETGLMV QISSLQTVKC SFGNVLSGLE EDGLVLVDAS
201: SSRSQGERLF YTLHLQMDNC NLNFEELRSR LLYLYEKC
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.