Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0381700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56970.1 | Os04t0381700-00 | AT2G28160.1 | 18268542 |
| AT3G56980.1 | Os04t0381700-00 | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042062_P001 | Maize | nucleus | 58.7 | 65.32 |
| KXG34133 | Sorghum | nucleus | 64.37 | 65.16 |
| Zm00001d011847_P001 | Maize | nucleus | 57.89 | 62.45 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 59.51 | 59.51 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 59.11 | 59.11 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 59.11 | 59.11 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 57.89 | 58.13 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 48.58 | 57.42 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 53.44 | 56.9 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 56.28 | 56.73 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 54.66 | 56.72 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 53.04 | 56.47 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 55.87 | 56.33 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 54.25 | 56.3 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 53.04 | 55.98 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 55.06 | 55.51 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 53.85 | 55.42 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 52.23 | 54.2 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 18.22 | 38.46 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 33.6 | 36.89 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 34.41 | 35.42 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 34.82 | 35.1 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 33.6 | 34.44 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 33.2 | 34.02 |
| KRH66814 | Soybean | nucleus | 33.2 | 34.02 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.6 | 33.6 |
| Bra003261.1-P | Field mustard | mitochondrion | 24.7 | 33.15 |
| CDY23861 | Canola | cytosol, plastid | 18.62 | 32.86 |
| PGSC0003DMT400076775 | Potato | cytosol | 12.96 | 30.48 |
| CDY14758 | Canola | nucleus | 29.15 | 30.25 |
| Bra014658.1-P | Field mustard | nucleus | 30.36 | 30.24 |
| CDX76026 | Canola | nucleus | 30.36 | 30.24 |
| Bra004609.1-P | Field mustard | nucleus | 29.15 | 29.63 |
| CDY69684 | Canola | nucleus | 29.96 | 29.48 |
| Bra014657.1-P | Field mustard | nucleus | 29.96 | 29.48 |
| PGSC0003DMT400076759 | Potato | nucleus | 21.46 | 29.44 |
| CDY06938 | Canola | nucleus | 28.34 | 29.41 |
| Bra016946.1-P | Field mustard | nucleus | 28.34 | 29.41 |
| CDY47394 | Canola | nucleus | 30.36 | 29.41 |
| CDY47392 | Canola | nucleus | 30.36 | 29.3 |
| Bra014659.1-P | Field mustard | nucleus | 30.36 | 29.3 |
| CDX76025 | Canola | nucleus | 30.36 | 29.3 |
| AT3G56970.1 | Thale cress | nucleus | 29.96 | 29.25 |
| CDX97997 | Canola | nucleus | 28.74 | 29.22 |
| CDY72354 | Canola | nucleus | 28.74 | 29.22 |
| Solyc10g079650.1.1 | Tomato | nucleus | 29.55 | 29.2 |
| CDY68089 | Canola | nucleus | 29.55 | 29.08 |
| CDX76031 | Canola | nucleus | 29.55 | 29.08 |
| Bra014654.1-P | Field mustard | nucleus | 29.55 | 29.08 |
| AT3G56980.1 | Thale cress | nucleus | 29.96 | 28.68 |
| AT2G41240.1 | Thale cress | nucleus | 27.53 | 28.1 |
| Bra007290.1-P | Field mustard | nucleus | 27.94 | 27.71 |
| CDY47395 | Canola | nucleus | 24.7 | 27.6 |
| Solyc10g079680.1.1 | Tomato | nucleus | 21.46 | 27.46 |
| CDY06148 | Canola | nucleus | 27.53 | 27.31 |
| CDX67670 | Canola | nucleus | 27.53 | 27.31 |
| CDX85121 | Canola | nucleus | 27.13 | 27.24 |
| CDX72086 | Canola | nucleus | 25.91 | 27.12 |
| CDY06147 | Canola | nucleus | 27.53 | 27.09 |
| Bra041013.1-P | Field mustard | nucleus | 27.53 | 27.09 |
| AT5G04150.1 | Thale cress | nucleus | 28.34 | 26.92 |
| Bra003260.1-P | Field mustard | nucleus | 27.13 | 26.91 |
| CDX72085 | Canola | nucleus | 27.13 | 26.69 |
| CDY71118 | Canola | nucleus | 26.72 | 26.61 |
| CDX67671 | Canola | nucleus | 26.72 | 26.51 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 26.32 | 26.42 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 26.32 | 26.42 |
| CDX77490 | Canola | nucleus | 26.32 | 26.21 |
| Bra014970.1-P | Field mustard | nucleus | 25.91 | 25.81 |
| CDX76027 | Canola | nucleus | 23.08 | 24.78 |
| CDY71388 | Canola | cytosol | 25.1 | 24.7 |
| CDX76032 | Canola | cytosol | 22.27 | 24.55 |
| Bra014653.1-P | Field mustard | cytosol | 22.27 | 24.55 |
| CDY47396 | Canola | mitochondrion | 29.15 | 24.41 |
| Bra007289.1-P | Field mustard | nucleus | 24.29 | 24.1 |
| CDY06149 | Canola | nucleus | 24.29 | 24.1 |
| CDX80905 | Canola | nucleus | 29.15 | 18.51 |
| Solyc10g079660.1.1 | Tomato | nucleus | 31.58 | 11.19 |
| CDX76023 | Canola | cytosol | 0.4 | 3.57 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | EntrezGene:4325750 | ProteinID:BAB64701.1 |
| ProteinID:BAF07338.1 | ProteinID:BAS76260.1 | EMBL:BR000688 | ncoils:Coil | ProteinID:EAZ14859.1 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009873 |
| GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010104 | GO:GO:0019748 | GO:GO:0045893 | GO:GO:0046685 |
| GO:GO:0046686 | GO:GO:0046983 | GO:GO:0071731 | GO:GO:0090575 | GO:GO:1900706 | GO:GO:1990641 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like | EnsemblPlantsGene:Os01g0952800 | EnsemblPlants:Os01t0952800-01 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | UniProt:Q0JFZ0 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0000DD8ECC | RefSeq:XP_015612709.1 | InterPro:bHLH_dom | SEG:seg | : |
Description
basic helix-loop-helix protein 056Achaete-scute transcription factor related domain containing protein. (Os01t0952800-01);Conserved hypothetical protein. (Os01t0952800-02)
Coordinates
chr1:-:41971444..41978093
Molecular Weight (calculated)
26963.0 Da
IEP (calculated)
5.676
GRAVY (calculated)
-0.290
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLFVDDPA FASSMSSLEA DIFSGAGQLP SSPWLDLDLD DDVQDLSMAP TTANAVSSGY GSGGSGSHRK LSHNAYERDR RKQLNELYSS LRALLPDADH
101: TKLSIPTTVS RVLKYIPELQ KQVENLERKK KELTTTSTTN CKPGVLGSQL MSEGMAPIVS ATCINDMEIM VQVSLLSNVA GSVLPLSKCI KVLENEGLHF
201: ISSSTSSGFG NRTFYSIHLQ RSEGTINEEC PAFCERLEKV VRNKAKL
101: TKLSIPTTVS RVLKYIPELQ KQVENLERKK KELTTTSTTN CKPGVLGSQL MSEGMAPIVS ATCINDMEIM VQVSLLSNVA GSVLPLSKCI KVLENEGLHF
201: ISSSTSSGFG NRTFYSIHLQ RSEGTINEEC PAFCERLEKV VRNKAKL
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKLSVSA
101: TVSQALKYIP ELQEQVKKLM KKKEELSFQI SGQRDLVYTD QNSKSEEGVT SYASTVSSTR LSETEVMVQI SSLQTEKCSF GNVLSGVEED GLVLVGASSS
201: RSHGERLFYS MHLQIKNGQV NSEELGDRLL YLYEKCGHSF T
101: TVSQALKYIP ELQEQVKKLM KKKEELSFQI SGQRDLVYTD QNSKSEEGVT SYASTVSSTR LSETEVMVQI SSLQTEKCSF GNVLSGVEED GLVLVGASSS
201: RSHGERLFYS MHLQIKNGQV NSEELGDRLL YLYEKCGHSF T
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.