Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G068960.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56970.1 | HORVU2Hr1G068960.2 | AT2G28160.1 | 18268542 |
| AT3G56980.1 | HORVU2Hr1G068960.2 | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G495700.1 | Wheat | nucleus | 89.84 | 89.47 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 89.02 | 88.66 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 88.62 | 88.26 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 77.24 | 79.17 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 74.8 | 75.1 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 73.58 | 73.88 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 73.58 | 73.88 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 68.29 | 72.41 |
| Zm00001d011847_P001 | Maize | nucleus | 55.69 | 59.83 |
| KXG34133 | Sorghum | nucleus | 58.94 | 59.43 |
| Zm00001d042062_P001 | Maize | nucleus | 52.85 | 58.56 |
| Os01t0952800-01 | Rice | nucleus | 58.13 | 57.89 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 52.44 | 50.99 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 36.59 | 37.5 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 17.07 | 35.9 |
| CDY23861 | Canola | cytosol, plastid | 19.92 | 35.0 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 34.55 | 34.69 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 31.71 | 34.67 |
| KRH66814 | Soybean | nucleus | 32.93 | 33.61 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 32.93 | 33.61 |
| Bra003261.1-P | Field mustard | mitochondrion | 24.8 | 33.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.93 | 32.79 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 31.3 | 31.95 |
| PGSC0003DMT400076759 | Potato | nucleus | 22.36 | 30.56 |
| Bra014657.1-P | Field mustard | nucleus | 30.89 | 30.28 |
| CDX76026 | Canola | nucleus | 30.49 | 30.24 |
| Bra014658.1-P | Field mustard | nucleus | 30.49 | 30.24 |
| CDY69684 | Canola | nucleus | 30.49 | 29.88 |
| CDY47394 | Canola | nucleus | 30.89 | 29.8 |
| CDX76025 | Canola | nucleus | 30.89 | 29.69 |
| CDY47392 | Canola | nucleus | 30.89 | 29.69 |
| Bra014659.1-P | Field mustard | nucleus | 30.89 | 29.69 |
| CDY68089 | Canola | nucleus | 30.08 | 29.48 |
| CDX76031 | Canola | nucleus | 29.67 | 29.08 |
| Bra014654.1-P | Field mustard | nucleus | 29.67 | 29.08 |
| AT3G56970.1 | Thale cress | nucleus | 29.67 | 28.85 |
| Bra004609.1-P | Field mustard | nucleus | 28.46 | 28.81 |
| CDY14758 | Canola | nucleus | 27.64 | 28.57 |
| Solyc10g079650.1.1 | Tomato | nucleus | 28.86 | 28.4 |
| CDX72086 | Canola | nucleus | 27.24 | 28.39 |
| AT3G56980.1 | Thale cress | nucleus | 29.67 | 28.29 |
| CDY06938 | Canola | nucleus | 27.24 | 28.15 |
| Bra007290.1-P | Field mustard | nucleus | 28.46 | 28.11 |
| AT2G41240.1 | Thale cress | nucleus | 27.64 | 28.1 |
| CDY47395 | Canola | nucleus | 25.2 | 28.05 |
| CDY72354 | Canola | nucleus | 27.64 | 27.98 |
| CDX97997 | Canola | nucleus | 27.64 | 27.98 |
| Solyc10g079680.1.1 | Tomato | nucleus | 21.95 | 27.98 |
| Bra016946.1-P | Field mustard | nucleus | 26.83 | 27.73 |
| CDY06148 | Canola | nucleus | 28.05 | 27.71 |
| AT5G04150.1 | Thale cress | nucleus | 29.27 | 27.69 |
| CDX85121 | Canola | nucleus | 27.64 | 27.64 |
| CDX67670 | Canola | nucleus | 27.64 | 27.31 |
| CDX67671 | Canola | nucleus | 27.64 | 27.31 |
| CDX72085 | Canola | nucleus | 27.64 | 27.09 |
| Bra014970.1-P | Field mustard | nucleus | 27.24 | 27.02 |
| CDX77490 | Canola | nucleus | 27.24 | 27.02 |
| CDY71118 | Canola | nucleus | 27.24 | 27.02 |
| Bra003260.1-P | Field mustard | nucleus | 27.24 | 26.91 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 26.83 | 26.83 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 26.83 | 26.83 |
| PGSC0003DMT400076775 | Potato | cytosol | 11.38 | 26.67 |
| CDX76027 | Canola | nucleus | 24.39 | 26.09 |
| Bra041013.1-P | Field mustard | nucleus | 26.42 | 25.9 |
| CDY06147 | Canola | nucleus | 26.42 | 25.9 |
| CDY47396 | Canola | mitochondrion | 30.08 | 25.08 |
| CDY71388 | Canola | cytosol | 25.2 | 24.7 |
| Bra007289.1-P | Field mustard | nucleus | 23.98 | 23.69 |
| CDY06149 | Canola | nucleus | 23.98 | 23.69 |
| Bra014653.1-P | Field mustard | cytosol | 21.54 | 23.66 |
| CDX76032 | Canola | cytosol | 21.54 | 23.66 |
| CDX80905 | Canola | nucleus | 26.02 | 16.45 |
| Solyc10g079660.1.1 | Tomato | nucleus | 31.71 | 11.19 |
| CDX76023 | Canola | cytosol | 0.41 | 3.57 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | UniProt:A0A287MMB2 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | EnsemblPlantsGene:HORVU3Hr1G108680 | EnsemblPlants:HORVU3Hr1G108680.1 | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000B4626BA | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:676036628..676039983
Molecular Weight (calculated)
27004.1 Da
IEP (calculated)
7.002
GRAVY (calculated)
-0.468
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHQTQMFDD PFASSMSSLD ADIFSVAGGL HPSQWPGLDH DVSLAPAANN GTSSGGYGSP GGGDGSGSHR KISHNAYERD RRKQLNELYS DLRSLLPDSD
101: HTEKLSIPIT VSRVLKYIPE LQKQVDGLEK KKEELTRASC KPGVLTMKEN TVPIVSATCL DEREIMVQVS LVSTMAGALP MSKCIKVLEN EGLRLISSST
201: SAFQNRTFYS LHLQRTQRTM SKECPAFCEE LENALTQKAG LRLHHQ
101: HTEKLSIPIT VSRVLKYIPE LQKQVDGLEK KKEELTRASC KPGVLTMKEN TVPIVSATCL DEREIMVQVS LVSTMAGALP MSKCIKVLEN EGLRLISSST
201: SAFQNRTFYS LHLQRTQRTM SKECPAFCEE LENALTQKAG LRLHHQ
001: MCTLTPMFPS KQQEWYSAST MEYPWLQSQV HSFSPTLHFP SFLHPLDDSK SHNINLHHMS LSHSNNTNSN NNNYQEEDRG AVVLEKKLNH NASERDRRRK
101: LNALYSSLRA LLPLSDQKRK LSIPMTVARV VKYIPEQKQE LQRLSRRKEE LLKRISRKTH QEQLRNKAMM DSIDSSSSQR IAANWLTDTE IAVQIATSKW
201: TSVSDMLLRL EENGLNVISV SSSVSSTARI FYTLHLQMRG DCKVRLEELI NGMLLGLRQS
101: LNALYSSLRA LLPLSDQKRK LSIPMTVARV VKYIPEQKQE LQRLSRRKEE LLKRISRKTH QEQLRNKAMM DSIDSSSSQR IAANWLTDTE IAVQIATSKW
201: TSVSDMLLRL EENGLNVISV SSSVSSTARI FYTLHLQMRG DCKVRLEELI NGMLLGLRQS
Arabidopsis Description
BHLH101basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT5G04150]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.