CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69684	Canola	nucleus	97.61	97.61
Bra014657.1-P	Field mustard	nucleus	92.43	92.43
CDX76026	Canola	nucleus	76.89	77.82
CDX76031	Canola	nucleus	77.29	77.29
CDY47394	Canola	nucleus	78.49	77.25
CDX76025	Canola	nucleus	78.49	76.95
CDY47392	Canola	nucleus	78.49	76.95
CDY47395	Canola	nucleus	67.33	76.47
AT3G56980.1	Thale cress	nucleus	76.49	74.42
CDX77489	Canola	cytosol, nucleus, plastid	70.12	71.54
CDX76023	Canola	cytosol	7.97	71.43
CDX85121	Canola	nucleus	69.32	70.73
CDY06148	Canola	nucleus	68.92	69.48
CDX76027	Canola	nucleus	63.35	69.13
CDY71388	Canola	cytosol	68.92	68.92
CDY71118	Canola	nucleus	67.73	68.55
CDY06149	Canola	nucleus	67.73	68.27
CDX67670	Canola	nucleus	67.73	68.27
CDX72086	Canola	nucleus	64.14	68.22
CDX67671	Canola	nucleus	67.33	67.87
CDY47396	Canola	mitochondrion	78.88	67.12
CDX77490	Canola	nucleus	66.14	66.94
CDX72085	Canola	nucleus	65.34	65.34
CDX76032	Canola	cytosol	58.17	65.18
CDY06147	Canola	nucleus	64.14	64.14
CDY06938	Canola	nucleus	53.39	56.3
CDY14758	Canola	nucleus	53.39	56.3
CDX97997	Canola	nucleus	53.39	55.14
CDY72354	Canola	nucleus	53.39	55.14
CDY23861	Canola	cytosol, plastid	29.88	53.57
KRG95137	Soybean	cytosol, nucleus, plastid	21.12	45.3
VIT_13s0047g00450.t01	Wine grape	nucleus	39.44	44.0
VIT_08s0007g05300.t01	Wine grape	nucleus	41.43	42.45
KRH66814	Soybean	nucleus	39.84	41.49
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	39.44	41.08
KRH66812	Soybean	cytosol, nucleus, plastid	37.45	39.0
PGSC0003DMT400076759	Potato	nucleus	26.69	37.22
Solyc10g079680.1.1	Tomato	nucleus	27.49	35.75
Zm00001d042062_P001	Maize	nucleus	30.28	34.23
GSMUA_Achr8P22120_001	Banana	nucleus	32.27	33.75
GSMUA_AchrUn_...	Banana	nucleus	32.27	32.79
Zm00001d011847_P001	Maize	nucleus	29.88	32.75
Solyc10g079650.1.1	Tomato	nucleus	31.87	32.0
TraesCS3B01G550200.2	Wheat	nucleus	31.08	31.58
PGSC0003DMT400076775	Potato	cytosol	13.15	31.43
TraesCS2B01G543800.1	Wheat	nucleus	31.08	31.2
KXG34133	Sorghum	nucleus	30.28	31.15
TraesCS3B01G549700.1	Wheat	nucleus	25.9	31.1
TraesCS3A01G489700.1	Wheat	nucleus	30.28	30.77
TraesCS2B01G543700.1	Wheat	nucleus	29.88	30.74
HORVU2Hr1G114070.1	Barley	nucleus	30.68	30.43
TraesCS2A01G515300.1	Wheat	nucleus	30.68	30.43
TraesCS3D01G495700.1	Wheat	nucleus	29.88	30.36
TraesCS3D01G495600.1	Wheat	nucleus	29.48	30.2
HORVU3Hr1G108680.1	Barley	nucleus	29.48	30.08
TraesCS3D01G495400.1	Wheat	nucleus	28.29	29.83
TraesCS3A01G489600.1	Wheat	nucleus	29.08	29.8
TraesCS2D01G517000.1	Wheat	nucleus	29.88	29.64
Os01t0952800-01	Rice	nucleus	29.08	29.55
TraesCS3B01G550000.1	Wheat	nucleus	28.69	29.39
TraesCS3A01G489500.1	Wheat	nucleus	27.49	28.99
TraesCS3B01G549800.1	Wheat	nucleus	27.49	28.99
HORVU3Hr1G108660.1	Barley	nucleus	26.69	28.88
TraesCS3A01G489400.1	Wheat	nucleus	26.69	28.88
HORVU3Hr1G108670.2	Barley	nucleus	27.49	28.75
TraesCS7B01G321400.1	Wheat	nucleus	28.29	28.51
TraesCS3D01G495300.1	Wheat	nucleus	26.29	28.21
TraesCS7A01G421000.1	Wheat	nucleus	27.89	27.56
CDX80905	Canola	nucleus	34.66	22.36
Solyc10g079660.1.1	Tomato	nucleus	37.05	13.34

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078JMP4	UniProt:A0A078JMP4
EnsemblPlants:CDY68089	ProteinID:CDY68089	ProteinID:CDY68089.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00069228001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935
PANTHER:PTHR13935:SF41	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0003E64A49	InterPro:bHLH_dom	:

Description

BnaCnng57560DBnaCnng57560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMP4]

Coordinates

chrLK036842:+:134..1251

Molecular Weight (calculated)

28525.9 Da

IEP (calculated)

6.948

GRAVY (calculated)

-0.465

Length

251 amino acids

Sequence
(BLAST)

001: MCALVPPLFP NFGWPSTGEY ESNYLAGVNL EDFTFLDFPA PETYGVEHHQ EIQEMLGVSV PSEGNGVVTK KLNHNASERD RRKKINSLFS SLRSCLPASD
101: QTKKLSIPQT VSRSLKYIPE LQEQVKKLIQ KKEELLVRVS GQRAIEHYVE PQPKAVARYV STISATKLGD NEVLVQISSS KNHNFSISNV LSGLEEDGFV
201: LVDVSSSRYH GKWLFYSLHL QMGNKDNHKL KCEELSQRIL YLYEECENSF R

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.