Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g051550.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56970.1 | Solyc06g051550.2.1 | AT2G28160.1 | 18268542 |
| AT3G56980.1 | Solyc06g051550.2.1 | AT2G28160.1 | 18268542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079650.1.1 | Tomato | nucleus | 21.95 | 61.2 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 8.46 | 50.43 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 15.21 | 47.11 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 16.5 | 46.94 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 15.78 | 45.64 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 15.35 | 44.4 |
| KRH66814 | Soybean | nucleus | 15.21 | 43.98 |
| Bra014658.1-P | Field mustard | nucleus | 14.06 | 39.52 |
| Solyc10g079680.1.1 | Tomato | nucleus | 10.9 | 39.38 |
| CDX76026 | Canola | nucleus | 13.77 | 38.71 |
| Bra014657.1-P | Field mustard | nucleus | 13.77 | 38.25 |
| Bra014654.1-P | Field mustard | nucleus | 13.49 | 37.45 |
| CDX76031 | Canola | nucleus | 13.49 | 37.45 |
| AT3G56980.1 | Thale cress | nucleus | 13.77 | 37.21 |
| CDY47395 | Canola | nucleus | 11.76 | 37.1 |
| CDY69684 | Canola | nucleus | 13.34 | 37.05 |
| CDY68089 | Canola | nucleus | 13.34 | 37.05 |
| Bra003261.1-P | Field mustard | mitochondrion | 9.76 | 36.96 |
| CDY47394 | Canola | nucleus | 13.34 | 36.47 |
| CDX76025 | Canola | nucleus | 13.34 | 36.33 |
| Bra014659.1-P | Field mustard | nucleus | 13.34 | 36.33 |
| CDY47392 | Canola | nucleus | 13.34 | 36.33 |
| CDY23861 | Canola | cytosol, plastid | 7.17 | 35.71 |
| AT3G56970.1 | Thale cress | nucleus | 12.91 | 35.57 |
| AT2G41240.1 | Thale cress | nucleus | 12.05 | 34.71 |
| CDY72354 | Canola | nucleus | 12.05 | 34.57 |
| CDX97997 | Canola | nucleus | 12.05 | 34.57 |
| Bra014971.1-P | Field mustard | cytosol, nucleus, plastid | 12.2 | 34.55 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 12.2 | 34.55 |
| CDX85121 | Canola | nucleus | 12.2 | 34.55 |
| CDY14758 | Canola | nucleus | 11.76 | 34.45 |
| Bra004609.1-P | Field mustard | nucleus | 11.91 | 34.16 |
| CDY06148 | Canola | nucleus | 12.2 | 34.14 |
| Bra016946.1-P | Field mustard | nucleus | 11.62 | 34.03 |
| CDY06938 | Canola | nucleus | 11.62 | 34.03 |
| Zm00001d042062_P001 | Maize | nucleus | 10.76 | 33.78 |
| Bra003260.1-P | Field mustard | nucleus | 12.05 | 33.73 |
| Bra007290.1-P | Field mustard | nucleus | 12.05 | 33.73 |
| CDX67670 | Canola | nucleus | 11.91 | 33.33 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 11.48 | 33.33 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 11.91 | 33.2 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 11.62 | 33.2 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 11.62 | 32.79 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 11.62 | 32.79 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 11.19 | 32.77 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 11.48 | 32.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.48 | 32.39 |
| KXG34133 | Sorghum | nucleus | 11.33 | 32.38 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 11.05 | 32.35 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 11.05 | 32.35 |
| Zm00001d011847_P001 | Maize | nucleus | 10.62 | 32.31 |
| CDX72086 | Canola | nucleus | 10.9 | 32.2 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 9.61 | 32.06 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 11.62 | 32.02 |
| CDY71118 | Canola | nucleus | 11.33 | 31.85 |
| CDX77490 | Canola | nucleus | 11.33 | 31.85 |
| CDX76027 | Canola | nucleus | 10.47 | 31.74 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 11.19 | 31.71 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 11.48 | 31.62 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 11.48 | 31.62 |
| Os01t0952800-01 | Rice | nucleus | 11.19 | 31.58 |
| Bra014970.1-P | Field mustard | nucleus | 11.19 | 31.45 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 11.05 | 31.43 |
| AT5G04150.1 | Thale cress | nucleus | 11.62 | 31.15 |
| CDY71388 | Canola | cytosol | 11.19 | 31.08 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 10.9 | 31.02 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 10.9 | 31.02 |
| CDX67671 | Canola | nucleus | 11.05 | 30.92 |
| CDX72085 | Canola | nucleus | 11.05 | 30.68 |
| CDY06149 | Canola | nucleus | 10.9 | 30.52 |
| Bra007289.1-P | Field mustard | nucleus | 10.9 | 30.52 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 10.19 | 30.34 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 10.04 | 30.17 |
| CDY47396 | Canola | mitochondrion | 12.77 | 30.17 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 10.76 | 30.12 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 10.33 | 30.0 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 10.9 | 29.92 |
| Bra014653.1-P | Field mustard | cytosol | 9.61 | 29.91 |
| CDX76032 | Canola | cytosol | 9.61 | 29.91 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 9.76 | 29.31 |
| Bra041013.1-P | Field mustard | nucleus | 10.33 | 28.69 |
| CDY06147 | Canola | nucleus | 10.33 | 28.69 |
| CDX80905 | Canola | nucleus | 11.91 | 21.34 |
| CDX76023 | Canola | cytosol | 0.72 | 17.86 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | InterPro:ARM-like |
| InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | GO:GO:0090575 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR011989 |
| InterPro:IPR036638 | UniProt:K4D2K7 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 |
| PANTHER:PTHR13935:SF41 | SMART:SM00353 | SUPFAM:SSF47459 | SUPFAM:SSF48371 | EnsemblPlantsGene:Solyc10g079660.1 | EnsemblPlants:Solyc10g079660.1.1 |
| UniParc:UPI000276A8AB | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr10:+:61156822..61162264
Molecular Weight (calculated)
78720.1 Da
IEP (calculated)
5.520
GRAVY (calculated)
-0.041
Length
697 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAISSSSPP LFSTTTNNFG WLLEDLISHE LTNSGETSNS SQKSLQHCDS NKFDQIIINS GDQYQPDQTV KKLNHNASER DRRKKINSLY SSLRSLLPPS
101: DHTKKLSIPS TVSRILKYIP ELQSEVERLV QKKEEFTSKN ILNKPKRIKG GIENSSFVIS TSELGDKEIV IQISTLKINK GSISEAISQL EDEGLVLLNA
201: TSFETFEDRV FYTLHFQFEK LPEMMKDFTV GLALIEQLPN IAPFLLESAA YRIMLLIVNK DDDHYDLDMD CFFNNGIVDN LVECCRSRNW RSLRRQAAET
301: LRELVNCGTM AQNQELLRRG VVTIFLQMLN DEEAIDLDDE EWFDDLLVVE AVKTLALLST KVDVRGDLVT AFVEQNLCRR LMLLFRNTRH TIVENVLTFV
401: ENFLTIGTEE QMQVLLDNQV LHHLRLVIVE PVVSDLYLLG GQYKVVEILG NFARRSRRLR DLVIDSGEDL ISLFRVLRSL ADDSIVAFDA SPAISAARTI
501: GYLCFGSPPP PFDKLRPSLP ILRFLINQLE PHIGERACPV IKHACLIIAC LARGGFDPIN ALIDENMCPI LVMLLAHPHS EVVASVLKVV ENFLKNGTDN
601: QIQVLHDSQV LQHVLEIVMN HDNLPPLHLR SVCRAIANIV NYRSSQIQRM VDAGIFPSII QISINQEVGD TKYEAIYAIS SVVTRGSHEQ IRVSAVF
101: DHTKKLSIPS TVSRILKYIP ELQSEVERLV QKKEEFTSKN ILNKPKRIKG GIENSSFVIS TSELGDKEIV IQISTLKINK GSISEAISQL EDEGLVLLNA
201: TSFETFEDRV FYTLHFQFEK LPEMMKDFTV GLALIEQLPN IAPFLLESAA YRIMLLIVNK DDDHYDLDMD CFFNNGIVDN LVECCRSRNW RSLRRQAAET
301: LRELVNCGTM AQNQELLRRG VVTIFLQMLN DEEAIDLDDE EWFDDLLVVE AVKTLALLST KVDVRGDLVT AFVEQNLCRR LMLLFRNTRH TIVENVLTFV
401: ENFLTIGTEE QMQVLLDNQV LHHLRLVIVE PVVSDLYLLG GQYKVVEILG NFARRSRRLR DLVIDSGEDL ISLFRVLRSL ADDSIVAFDA SPAISAARTI
501: GYLCFGSPPP PFDKLRPSLP ILRFLINQLE PHIGERACPV IKHACLIIAC LARGGFDPIN ALIDENMCPI LVMLLAHPHS EVVASVLKVV ENFLKNGTDN
601: QIQVLHDSQV LQHVLEIVMN HDNLPPLHLR SVCRAIANIV NYRSSQIQRM VDAGIFPSII QISINQEVGD TKYEAIYAIS SVVTRGSHEQ IRVSAVF
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.