Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014659.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY47392 | Canola | nucleus | 100.0 | 100.0 |
| CDY47394 | Canola | nucleus | 98.44 | 98.82 |
| CDX76023 | Canola | cytosol | 9.77 | 89.29 |
| AT3G56970.1 | Thale cress | nucleus | 82.03 | 83.0 |
| CDX76026 | Canola | nucleus | 78.91 | 81.45 |
| CDY68089 | Canola | nucleus | 76.95 | 78.49 |
| CDY69684 | Canola | nucleus | 76.56 | 78.09 |
| CDY47395 | Canola | nucleus | 66.8 | 77.38 |
| CDX76031 | Canola | nucleus | 75.78 | 77.29 |
| CDX77489 | Canola | cytosol, nucleus, plastid | 68.36 | 71.14 |
| CDY06148 | Canola | nucleus | 68.75 | 70.68 |
| CDX72086 | Canola | nucleus | 64.84 | 70.34 |
| CDX85121 | Canola | nucleus | 67.58 | 70.33 |
| CDY71388 | Canola | cytosol | 68.75 | 70.12 |
| CDX67671 | Canola | nucleus | 67.97 | 69.88 |
| CDY71118 | Canola | nucleus | 67.58 | 69.76 |
| CDX67670 | Canola | nucleus | 67.58 | 69.48 |
| CDY06149 | Canola | nucleus | 67.58 | 69.48 |
| CDX77490 | Canola | nucleus | 66.41 | 68.55 |
| CDX72085 | Canola | nucleus | 66.02 | 67.33 |
| CDY06147 | Canola | nucleus | 64.84 | 66.14 |
| CDX76027 | Canola | nucleus | 57.81 | 64.35 |
| CDY47396 | Canola | mitochondrion | 67.97 | 58.98 |
| CDX76032 | Canola | cytosol | 51.17 | 58.48 |
| CDY23861 | Canola | cytosol, plastid | 31.64 | 57.86 |
| CDY06938 | Canola | nucleus | 53.52 | 57.56 |
| CDY14758 | Canola | nucleus | 53.52 | 57.56 |
| CDX97997 | Canola | nucleus | 53.52 | 56.38 |
| CDY72354 | Canola | nucleus | 53.52 | 56.38 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 42.58 | 44.49 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 38.67 | 44.0 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 19.92 | 43.59 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 39.45 | 41.91 |
| KRH66814 | Soybean | nucleus | 38.67 | 41.08 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 37.11 | 39.42 |
| PGSC0003DMT400076759 | Potato | nucleus | 25.39 | 36.11 |
| Solyc10g079680.1.1 | Tomato | nucleus | 26.56 | 35.23 |
| Zm00001d042062_P001 | Maize | nucleus | 29.69 | 34.23 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 31.64 | 33.75 |
| Solyc10g079650.1.1 | Tomato | nucleus | 32.03 | 32.8 |
| Zm00001d011847_P001 | Maize | nucleus | 29.3 | 32.75 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 26.56 | 32.54 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 31.64 | 32.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.25 | 32.39 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 30.86 | 32.38 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 31.64 | 32.02 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 30.47 | 31.58 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 30.47 | 31.58 |
| PGSC0003DMT400076775 | Potato | cytosol | 12.89 | 31.43 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 30.86 | 31.23 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 30.86 | 31.23 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 30.08 | 31.17 |
| KXG34133 | Sorghum | nucleus | 29.69 | 31.15 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 29.69 | 30.89 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 28.52 | 30.67 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 28.52 | 30.42 |
| Os01t0952800-01 | Rice | nucleus | 29.3 | 30.36 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 27.73 | 29.83 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 27.73 | 29.83 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 28.52 | 29.8 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 28.52 | 29.8 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 26.95 | 29.74 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 28.91 | 29.72 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 28.12 | 29.39 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 26.56 | 29.31 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 28.91 | 29.13 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 26.17 | 28.63 |
| CDX80905 | Canola | nucleus | 35.16 | 23.14 |
| Solyc10g079660.1.1 | Tomato | nucleus | 36.33 | 13.34 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | GO:A0A078CGT8 | UniProt:A0A078CGT8 |
| EnsemblPlants:CDX76025 | ProteinID:CDX76025 | ProteinID:CDX76025.1 | ProteinID:CDY47392.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00126249001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000254476B | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g02890DBnaA04g02890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CGT8]
Coordinates
chrLK031806:-:258950..260108
Molecular Weight (calculated)
29035.4 Da
IEP (calculated)
5.711
GRAVY (calculated)
-0.446
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MCALVPPLFP DFGWPSTAGY ERSYYLGGEN LNNDMFLDFP VLETYGVLAH HQNSLGVSVS SEGNGIDNNP VVKKKLNHNA SERDRRKKIN SLFASLRSCL
101: PTSDQSKKLS ISATVSRSLK YIPELQEQVK KLLQKKEELL VRVSGQRDIE LYVKPQPKTV ASYVSTVSAT RLGDNEVMVQ ISSSKINNFS ISNVLTGLEE
201: DDFVLVDVSS SRSQGERLFY TLHLQVENMD DHYKMNCEEL SERMLYLYEE CENSFR
101: PTSDQSKKLS ISATVSRSLK YIPELQEQVK KLLQKKEELL VRVSGQRDIE LYVKPQPKTV ASYVSTVSAT RLGDNEVMVQ ISSSKINNFS ISNVLTGLEE
201: DDFVLVDVSS SRSQGERLFY TLHLQVENMD DHYKMNCEEL SERMLYLYEE CENSFR
001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN
Arabidopsis Description
ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.