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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX77489 Canola cytosol, nucleus, plastid 95.12 95.12
CDY71388 Canola cytosol 79.67 78.09
CDY71118 Canola nucleus 78.05 77.42
CDX77490 Canola nucleus 77.24 76.61
CDY06149 Canola nucleus 77.24 76.31
CDY06148 Canola nucleus 76.83 75.9
CDX72086 Canola nucleus 72.36 75.42
CDX72085 Canola nucleus 73.98 72.51
CDX67670 Canola nucleus 72.36 71.49
CDY06147 Canola nucleus 72.76 71.31
CDX67671 Canola nucleus 70.73 69.88
CDX76026 Canola nucleus 69.92 69.35
CDY68089 Canola nucleus 70.73 69.32
CDY69684 Canola nucleus 69.92 68.53
CDY47395 Canola nucleus 61.38 68.33
CDY47394 Canola nucleus 70.33 67.84
CDX76025 Canola nucleus 70.33 67.58
CDY47392 Canola nucleus 70.33 67.58
AT3G56980.1 Thale cress nucleus 70.73 67.44
CDX76031 Canola nucleus 67.89 66.53
CDX76023 Canola cytosol 6.5 57.14
CDX76027 Canola nucleus 50.81 54.35
CDY06938 Canola nucleus 51.22 52.94
CDY14758 Canola nucleus 50.81 52.52
CDY47396 Canola mitochondrion 61.38 51.19
CDX76032 Canola cytosol 45.94 50.45
CDY72354 Canola nucleus 49.59 50.21
CDX97997 Canola nucleus 49.59 50.21
CDY23861 Canola cytosol, plastid 28.05 49.29
VIT_13s0047g00450.t01 Wine grape nucleus 35.37 38.67
KRG95137 Soybean cytosol, nucleus, plastid 17.89 37.61
VIT_08s0007g05300.t01 Wine grape nucleus 37.4 37.55
PGSC0003DMT400076759 Potato nucleus 26.42 36.11
KRH66814 Soybean nucleus 34.55 35.27
VIT_13s0073g00400.t01 Wine grape extracellular, golgi, nucleus 34.15 34.85
KRH66812 Soybean cytosol, nucleus, plastid 34.15 34.85
Solyc10g079680.1.1 Tomato nucleus 26.42 33.68
Solyc10g079650.1.1 Tomato nucleus 31.71 31.2
Zm00001d011847_P001 Maize nucleus 28.86 31.0
GSMUA_Achr8P22120_001 Banana nucleus 30.08 30.83
Zm00001d042062_P001 Maize nucleus 27.64 30.63
TraesCS3B01G549700.1 Wheat nucleus 26.02 30.62
GSMUA_AchrUn_... Banana nucleus 30.08 29.96
TraesCS3B01G550200.2 Wheat nucleus 28.86 28.74
KXG34133 Sorghum nucleus 28.46 28.69
PGSC0003DMT400076775 Potato cytosol 12.2 28.57
TraesCS2A01G515300.1 Wheat nucleus 29.27 28.46
TraesCS2B01G543800.1 Wheat nucleus 28.86 28.4
TraesCS3D01G495700.1 Wheat nucleus 28.46 28.34
TraesCS2B01G543700.1 Wheat nucleus 28.05 28.28
TraesCS3D01G495400.1 Wheat nucleus 27.24 28.15
HORVU2Hr1G114070.1 Barley nucleus 28.86 28.06
TraesCS2D01G517000.1 Wheat nucleus 28.86 28.06
TraesCS3A01G489400.1 Wheat nucleus 26.42 28.02
HORVU3Hr1G108660.1 Barley nucleus 26.42 28.02
TraesCS3A01G489700.1 Wheat nucleus 28.05 27.94
TraesCS3B01G549800.1 Wheat nucleus 26.83 27.73
HORVU3Hr1G108680.1 Barley nucleus 27.64 27.64
TraesCS3D01G495300.1 Wheat nucleus 26.02 27.35
TraesCS3A01G489500.1 Wheat nucleus 26.42 27.31
TraesCS7B01G321400.1 Wheat nucleus 27.64 27.31
Os01t0952800-01 Rice nucleus 27.24 27.13
HORVU3Hr1G108670.2 Barley nucleus 26.42 27.08
TraesCS3D01G495600.1 Wheat nucleus 26.83 26.94
TraesCS3A01G489600.1 Wheat nucleus 26.83 26.94
TraesCS3B01G550000.1 Wheat nucleus 26.42 26.53
TraesCS7A01G421000.1 Wheat nucleus 27.24 26.38
CDX80905 Canola nucleus 33.33 21.08
Solyc10g079660.1.1 Tomato nucleus 34.55 12.2
Protein Annotations
MapMan:15.5.32MapMan:25.4.1.6MapMan:25.5.1.3Gene3D:4.10.280.10GO:A0A078D747EnsemblPlants:CDX85121
ProteinID:CDX85121ProteinID:CDX85121.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0006139GO:GO:0006357GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00142644001InterPro:HLH_DNA-bd_sfInterPro:IPR011598
InterPro:IPR036638InterPro:MASH1/Ascl1a-likePFAM:PF00010PFscan:PS50888PANTHER:PTHR13935PANTHER:PTHR13935:SF41
SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EEAB66InterPro:bHLH_domSEG:seg:
Description
BnaC07g07850D
Coordinates
chrLK031840:-:860660..861544
Molecular Weight (calculated)
28138.6 Da
IEP (calculated)
9.392
GRAVY (calculated)
-0.512
Length
246 amino acids
Sequence
(BLAST)
001: MHALGPPLFP NSGWASRGEY ERYNLIGDNH KIGTFLDFPV PQTYGVVHHQ TSLGVSVSSE VNGINNNSVV IKKLNHNANE RNRRKKTNSL FSTLRSCLPS
101: SDEPKKLSIP QTISRSVQYI PELQEEVKKL IQKKEHLMLR ESGQRERYAK PEPKVAASYF STVFATKLRD NEVMVQISSS KIRNFSIYNV LSGLEKDGLV
201: LVDVSSSSSR REQLFYTLHL QVDKIDNYKL ICEELSQRIL YLYEEC
Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.