Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX77489 | Canola | cytosol, nucleus, plastid | 95.12 | 95.12 |
CDY71388 | Canola | cytosol | 79.67 | 78.09 |
CDY71118 | Canola | nucleus | 78.05 | 77.42 |
CDX77490 | Canola | nucleus | 77.24 | 76.61 |
CDY06149 | Canola | nucleus | 77.24 | 76.31 |
CDY06148 | Canola | nucleus | 76.83 | 75.9 |
CDX72086 | Canola | nucleus | 72.36 | 75.42 |
CDX72085 | Canola | nucleus | 73.98 | 72.51 |
CDX67670 | Canola | nucleus | 72.36 | 71.49 |
CDY06147 | Canola | nucleus | 72.76 | 71.31 |
CDX67671 | Canola | nucleus | 70.73 | 69.88 |
CDX76026 | Canola | nucleus | 69.92 | 69.35 |
CDY68089 | Canola | nucleus | 70.73 | 69.32 |
CDY69684 | Canola | nucleus | 69.92 | 68.53 |
CDY47395 | Canola | nucleus | 61.38 | 68.33 |
CDY47394 | Canola | nucleus | 70.33 | 67.84 |
CDX76025 | Canola | nucleus | 70.33 | 67.58 |
CDY47392 | Canola | nucleus | 70.33 | 67.58 |
AT3G56980.1 | Thale cress | nucleus | 70.73 | 67.44 |
CDX76031 | Canola | nucleus | 67.89 | 66.53 |
CDX76023 | Canola | cytosol | 6.5 | 57.14 |
CDX76027 | Canola | nucleus | 50.81 | 54.35 |
CDY06938 | Canola | nucleus | 51.22 | 52.94 |
CDY14758 | Canola | nucleus | 50.81 | 52.52 |
CDY47396 | Canola | mitochondrion | 61.38 | 51.19 |
CDX76032 | Canola | cytosol | 45.94 | 50.45 |
CDY72354 | Canola | nucleus | 49.59 | 50.21 |
CDX97997 | Canola | nucleus | 49.59 | 50.21 |
CDY23861 | Canola | cytosol, plastid | 28.05 | 49.29 |
VIT_13s0047g00450.t01 | Wine grape | nucleus | 35.37 | 38.67 |
KRG95137 | Soybean | cytosol, nucleus, plastid | 17.89 | 37.61 |
VIT_08s0007g05300.t01 | Wine grape | nucleus | 37.4 | 37.55 |
PGSC0003DMT400076759 | Potato | nucleus | 26.42 | 36.11 |
KRH66814 | Soybean | nucleus | 34.55 | 35.27 |
VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 34.15 | 34.85 |
KRH66812 | Soybean | cytosol, nucleus, plastid | 34.15 | 34.85 |
Solyc10g079680.1.1 | Tomato | nucleus | 26.42 | 33.68 |
Solyc10g079650.1.1 | Tomato | nucleus | 31.71 | 31.2 |
Zm00001d011847_P001 | Maize | nucleus | 28.86 | 31.0 |
GSMUA_Achr8P22120_001 | Banana | nucleus | 30.08 | 30.83 |
Zm00001d042062_P001 | Maize | nucleus | 27.64 | 30.63 |
TraesCS3B01G549700.1 | Wheat | nucleus | 26.02 | 30.62 |
GSMUA_AchrUn_... | Banana | nucleus | 30.08 | 29.96 |
TraesCS3B01G550200.2 | Wheat | nucleus | 28.86 | 28.74 |
KXG34133 | Sorghum | nucleus | 28.46 | 28.69 |
PGSC0003DMT400076775 | Potato | cytosol | 12.2 | 28.57 |
TraesCS2A01G515300.1 | Wheat | nucleus | 29.27 | 28.46 |
TraesCS2B01G543800.1 | Wheat | nucleus | 28.86 | 28.4 |
TraesCS3D01G495700.1 | Wheat | nucleus | 28.46 | 28.34 |
TraesCS2B01G543700.1 | Wheat | nucleus | 28.05 | 28.28 |
TraesCS3D01G495400.1 | Wheat | nucleus | 27.24 | 28.15 |
HORVU2Hr1G114070.1 | Barley | nucleus | 28.86 | 28.06 |
TraesCS2D01G517000.1 | Wheat | nucleus | 28.86 | 28.06 |
TraesCS3A01G489400.1 | Wheat | nucleus | 26.42 | 28.02 |
HORVU3Hr1G108660.1 | Barley | nucleus | 26.42 | 28.02 |
TraesCS3A01G489700.1 | Wheat | nucleus | 28.05 | 27.94 |
TraesCS3B01G549800.1 | Wheat | nucleus | 26.83 | 27.73 |
HORVU3Hr1G108680.1 | Barley | nucleus | 27.64 | 27.64 |
TraesCS3D01G495300.1 | Wheat | nucleus | 26.02 | 27.35 |
TraesCS3A01G489500.1 | Wheat | nucleus | 26.42 | 27.31 |
TraesCS7B01G321400.1 | Wheat | nucleus | 27.64 | 27.31 |
Os01t0952800-01 | Rice | nucleus | 27.24 | 27.13 |
HORVU3Hr1G108670.2 | Barley | nucleus | 26.42 | 27.08 |
TraesCS3D01G495600.1 | Wheat | nucleus | 26.83 | 26.94 |
TraesCS3A01G489600.1 | Wheat | nucleus | 26.83 | 26.94 |
TraesCS3B01G550000.1 | Wheat | nucleus | 26.42 | 26.53 |
TraesCS7A01G421000.1 | Wheat | nucleus | 27.24 | 26.38 |
CDX80905 | Canola | nucleus | 33.33 | 21.08 |
Solyc10g079660.1.1 | Tomato | nucleus | 34.55 | 12.2 |
Protein Annotations
MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | GO:A0A078D747 | EnsemblPlants:CDX85121 |
ProteinID:CDX85121 | ProteinID:CDX85121.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00142644001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 |
SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEAB66 | InterPro:bHLH_dom | SEG:seg | : |
Description
BnaC07g07850D
Coordinates
chrLK031840:-:860660..861544
Molecular Weight (calculated)
28138.6 Da
IEP (calculated)
9.392
GRAVY (calculated)
-0.512
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MHALGPPLFP NSGWASRGEY ERYNLIGDNH KIGTFLDFPV PQTYGVVHHQ TSLGVSVSSE VNGINNNSVV IKKLNHNANE RNRRKKTNSL FSTLRSCLPS
101: SDEPKKLSIP QTISRSVQYI PELQEEVKKL IQKKEHLMLR ESGQRERYAK PEPKVAASYF STVFATKLRD NEVMVQISSS KIRNFSIYNV LSGLEKDGLV
201: LVDVSSSSSR REQLFYTLHL QVDKIDNYKL ICEELSQRIL YLYEEC
101: SDEPKKLSIP QTISRSVQYI PELQEEVKKL IQKKEHLMLR ESGQRERYAK PEPKVAASYF STVFATKLRD NEVMVQISSS KIRNFSIYNV LSGLEKDGLV
201: LVDVSSSSSR REQLFYTLHL QVDKIDNYKL ICEELSQRIL YLYEEC
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.