CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003261.1-P	Field mustard	mitochondrion	71.08	96.2
CDX67670	Canola	nucleus	83.53	83.53
CDX77489	Canola	cytosol, nucleus, plastid	70.28	71.14
CDX72086	Canola	nucleus	67.07	70.76
CDX85121	Canola	nucleus	69.88	70.73
CDY71118	Canola	nucleus	69.48	69.76
CDY06148	Canola	nucleus	69.48	69.48
CDY06149	Canola	nucleus	69.48	69.48
CDY71388	Canola	cytosol	69.88	69.32
CDY47394	Canola	nucleus	69.88	68.24
CDX77490	Canola	nucleus	67.87	68.15
CDX76025	Canola	nucleus	69.88	67.97
CDY47392	Canola	nucleus	69.88	67.97
CDY68089	Canola	nucleus	67.87	67.33
CDX76031	Canola	nucleus	67.47	66.93
CDY69684	Canola	nucleus	67.47	66.93
AT3G56980.1	Thale cress	nucleus	68.67	66.28
CDX72085	Canola	nucleus	66.67	66.14
CDX76026	Canola	nucleus	65.86	66.13
CDX76023	Canola	cytosol	7.23	64.29
CDY47395	Canola	nucleus	57.03	64.25
CDY06147	Canola	nucleus	64.66	64.14
CDX76027	Canola	nucleus	53.41	57.83
CDY47396	Canola	mitochondrion	62.65	52.88
CDY23861	Canola	cytosol, plastid	27.71	49.29
CDX76032	Canola	cytosol	43.78	48.66
CDY72354	Canola	nucleus	46.59	47.74
CDX97997	Canola	nucleus	46.59	47.74
CDY06938	Canola	nucleus	45.38	47.48
CDY14758	Canola	nucleus	45.38	47.48
KRG95137	Soybean	cytosol, nucleus, plastid	18.07	38.46
VIT_13s0047g00450.t01	Wine grape	nucleus	34.54	38.22
VIT_08s0007g05300.t01	Wine grape	nucleus	37.35	37.96
KRH66814	Soybean	nucleus	34.94	36.1
KRH66812	Soybean	cytosol, nucleus, plastid	34.54	35.68
PGSC0003DMT400076759	Potato	nucleus	24.9	34.44
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	33.33	34.44
Solyc10g079680.1.1	Tomato	nucleus	24.5	31.61
Zm00001d042062_P001	Maize	nucleus	26.91	30.18
Zm00001d011847_P001	Maize	nucleus	27.71	30.13
GSMUA_Achr8P22120_001	Banana	nucleus	28.51	29.58
TraesCS2A01G515300.1	Wheat	nucleus	29.32	28.85
TraesCS3B01G549700.1	Wheat	nucleus	24.1	28.71
TraesCS2D01G517000.1	Wheat	nucleus	28.92	28.46
TraesCS2B01G543800.1	Wheat	nucleus	28.51	28.4
TraesCS2B01G543700.1	Wheat	nucleus	27.71	28.28
HORVU2Hr1G114070.1	Barley	nucleus	28.51	28.06
TraesCS3D01G495700.1	Wheat	nucleus	27.71	27.94
TraesCS3B01G550200.2	Wheat	nucleus	27.71	27.94
KXG34133	Sorghum	nucleus	27.31	27.87
TraesCS3D01G495400.1	Wheat	nucleus	26.51	27.73
HORVU3Hr1G108680.1	Barley	nucleus	27.31	27.64
Solyc10g079650.1.1	Tomato	nucleus	27.71	27.6
TraesCS3A01G489700.1	Wheat	nucleus	27.31	27.53
GSMUA_AchrUn_...	Banana	nucleus	26.91	27.13
TraesCS3A01G489600.1	Wheat	nucleus	26.51	26.94
TraesCS3D01G495600.1	Wheat	nucleus	26.51	26.94
Os01t0952800-01	Rice	nucleus	26.51	26.72
TraesCS3B01G550000.1	Wheat	nucleus	26.1	26.53
TraesCS7B01G321400.1	Wheat	nucleus	26.51	26.51
TraesCS3A01G489500.1	Wheat	nucleus	25.3	26.47
TraesCS3B01G549800.1	Wheat	nucleus	25.3	26.47
TraesCS7A01G421000.1	Wheat	nucleus	26.91	26.38
HORVU3Hr1G108660.1	Barley	nucleus	24.5	26.29
TraesCS3A01G489400.1	Wheat	nucleus	24.1	25.86
HORVU3Hr1G108670.2	Barley	nucleus	24.9	25.83
PGSC0003DMT400076775	Potato	cytosol	10.84	25.71
TraesCS3D01G495300.1	Wheat	nucleus	24.1	25.64
CDX80905	Canola	nucleus	29.72	19.02
Solyc10g079660.1.1	Tomato	nucleus	30.92	11.05

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078BSK5	EnsemblPlants:CDX67671
ProteinID:CDX67671	ProteinID:CDX67671.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00098842001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EDFAB1	InterPro:bHLH_dom	SEG:seg	:

Description

BnaA07g17110D

Coordinates

chrLK031787:-:1655993..1656892

Molecular Weight (calculated)

27855.2 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.420

Length

249 amino acids

Sequence
(BLAST)

001: MCELGPVLFP KFGWALTGNC ASYSTNDGTS FHDSPVPKTY GVAHHQTSLG VSASSEGNGI DNNSVMIKKL SHNANERNRR KKMNSLFSTL RSCLPASDQL
101: NKLSIPQTVL RTVKYIPDLQ EQVKKLTQKK EDLLVRALGQ RDMESYVKQR PQAVASYVST VFATKNGDNE VMVQISSSKI HKFSIYNVLS GLEEDRFVVV
201: DVSSSSSRGE RLFYTLHLQV GKTDSNKIIC EELSQKILYL YEECGNSFR

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.