CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56970.1	CDX71377	AT2G28160.1	18268542
AT3G56970.1	CDX77160	AT2G28160.1	18268542
AT3G56970.1	CDX83286	AT2G28160.1	18268542
AT3G56970.1	CDY04543	AT2G28160.1	18268542
AT3G56970.1	CDY30505	AT2G28160.1	18268542
AT3G56970.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014659.1-P	Field mustard	nucleus	98.82	98.44
CDY47392	Canola	nucleus	98.82	98.44
CDX76025	Canola	nucleus	98.82	98.44
CDX76023	Canola	cytosol	9.8	89.29
AT3G56970.1	Thale cress	nucleus	82.35	83.0
CDX76026	Canola	nucleus	78.82	81.05
CDY68089	Canola	nucleus	77.25	78.49
CDY69684	Canola	nucleus	76.86	78.09
CDY47395	Canola	nucleus	67.06	77.38
CDX76031	Canola	nucleus	75.69	76.89
CDX77489	Canola	cytosol, nucleus, plastid	68.63	71.14
CDX85121	Canola	nucleus	67.84	70.33
CDY06148	Canola	nucleus	68.63	70.28
CDY71388	Canola	cytosol	69.02	70.12
CDX72086	Canola	nucleus	64.71	69.92
CDX67671	Canola	nucleus	68.24	69.88
CDY06149	Canola	nucleus	67.84	69.48
CDX67670	Canola	nucleus	67.84	69.48
CDY71118	Canola	nucleus	67.45	69.35
CDX77490	Canola	nucleus	66.27	68.15
CDX72085	Canola	nucleus	66.67	67.73
CDY06147	Canola	nucleus	65.49	66.53
CDX76027	Canola	nucleus	58.04	64.35
CDY47396	Canola	mitochondrion	68.24	58.98
CDY23861	Canola	cytosol, plastid	31.76	57.86
CDY06938	Canola	nucleus	53.33	57.14
CDY14758	Canola	nucleus	53.33	57.14
CDX76032	Canola	cytosol	50.2	57.14
CDX97997	Canola	nucleus	53.73	56.38
CDY72354	Canola	nucleus	53.73	56.38
VIT_08s0007g05300.t01	Wine grape	nucleus	43.14	44.9
VIT_13s0047g00450.t01	Wine grape	nucleus	38.82	44.0
KRG95137	Soybean	cytosol, nucleus, plastid	20.0	43.59
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	39.61	41.91
KRH66814	Soybean	nucleus	38.82	41.08
KRH66812	Soybean	cytosol, nucleus, plastid	37.25	39.42
PGSC0003DMT400076759	Potato	nucleus	25.49	36.11
Solyc10g079680.1.1	Tomato	nucleus	26.67	35.23
Zm00001d042062_P001	Maize	nucleus	29.8	34.23
GSMUA_Achr8P22120_001	Banana	nucleus	31.76	33.75
Solyc10g079650.1.1	Tomato	nucleus	32.16	32.8
Zm00001d011847_P001	Maize	nucleus	29.41	32.75
TraesCS2B01G543800.1	Wheat	nucleus	31.76	32.4
GSMUA_AchrUn_...	Banana	nucleus	31.37	32.39
TraesCS2B01G543700.1	Wheat	nucleus	30.98	32.38
TraesCS3B01G549700.1	Wheat	nucleus	26.27	32.06
TraesCS2A01G515300.1	Wheat	nucleus	31.76	32.02
TraesCS3D01G495700.1	Wheat	nucleus	30.59	31.58
TraesCS3B01G550200.2	Wheat	nucleus	30.59	31.58
PGSC0003DMT400076775	Potato	cytosol	12.94	31.43
HORVU2Hr1G114070.1	Barley	nucleus	30.98	31.23
TraesCS2D01G517000.1	Wheat	nucleus	30.98	31.23
TraesCS3A01G489700.1	Wheat	nucleus	30.2	31.17
KXG34133	Sorghum	nucleus	29.8	31.15
HORVU3Hr1G108680.1	Barley	nucleus	29.8	30.89
Os01t0952800-01	Rice	nucleus	29.41	30.36
TraesCS3D01G495400.1	Wheat	nucleus	28.24	30.25
HORVU3Hr1G108670.2	Barley	nucleus	28.24	30.0
TraesCS3A01G489600.1	Wheat	nucleus	28.63	29.8
TraesCS3D01G495600.1	Wheat	nucleus	28.63	29.8
TraesCS7B01G321400.1	Wheat	nucleus	29.02	29.72
TraesCS3A01G489500.1	Wheat	nucleus	27.45	29.41
TraesCS3B01G549800.1	Wheat	nucleus	27.45	29.41
TraesCS3B01G550000.1	Wheat	nucleus	28.24	29.39
HORVU3Hr1G108660.1	Barley	nucleus	26.67	29.31
TraesCS3A01G489400.1	Wheat	nucleus	26.27	28.88
TraesCS7A01G421000.1	Wheat	nucleus	28.24	28.35
TraesCS3D01G495300.1	Wheat	nucleus	25.88	28.21
CDX80905	Canola	nucleus	34.9	22.88
Solyc10g079660.1.1	Tomato	nucleus	36.47	13.34

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078IDF2	UniProt:A0A078IDF2
EnsemblPlants:CDY47394	ProteinID:CDY47394	ProteinID:CDY47394.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00087295001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935
PANTHER:PTHR13935:SF41	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE9F46	InterPro:bHLH_dom	SEG:seg

Description

BnaC04g24690DBnaC04g24690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDF2]

Coordinates

chrLK032713:-:131968..133147

Molecular Weight (calculated)

28849.2 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.417

Length

255 amino acids

Sequence
(BLAST)

001: MCALVPPLFP DFGWPSTAGY ESYYLGGENL NNDMFLDFPV VETYGVLAHH QNSLGVSVSS EGNGIDNNPV VKKKLNHNAS ERDRRKKINS LFASLRSCLP
101: TSDQSKKLSI SATVSRSLKY IPELQEQVKK LLQKKEELLV RVSGQRDIEL YVKPQPKAIA SYVSTVSATR LGDNEVMVQI SSSKINNFSI SNVLTGLEED
201: DFVLVDVSSS RSQGERLFYT LHLQVENMDD HYKMNCEELS ERMLYLYEEC ENSFR

Best Arabidopsis Sequence Match ( AT3G56970.1 )
(BLAST)

001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN

Arabidopsis Description

ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.