CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71377
CDX77160
CDX83286
CDY04543
CDY30505
CDY31199

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	CDX71377	AT2G28160.1	18268542
AT3G56980.1	CDX77160	AT2G28160.1	18268542
AT3G56980.1	CDX83286	AT2G28160.1	18268542
AT3G56980.1	CDY04543	AT2G28160.1	18268542
AT3G56980.1	CDY30505	AT2G28160.1	18268542
AT3G56980.1	CDY31199	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003260.1-P	Field mustard	nucleus	97.59	97.59
CDX67671	Canola	nucleus	83.53	83.53
CDX85121	Canola	nucleus	71.49	72.36
CDX72086	Canola	nucleus	67.47	71.19
CDX77489	Canola	cytosol, nucleus, plastid	70.28	71.14
CDY06148	Canola	nucleus	70.28	70.28
CDY71118	Canola	nucleus	69.88	70.16
CDY06149	Canola	nucleus	69.48	69.48
CDX77490	Canola	nucleus	68.27	68.55
CDY71388	Canola	cytosol	69.08	68.53
CDX76023	Canola	cytosol	7.63	67.86
CDY47394	Canola	nucleus	69.48	67.84
CDY68089	Canola	nucleus	68.27	67.73
CDX72085	Canola	nucleus	68.27	67.73
CDY47392	Canola	nucleus	69.48	67.58
CDX76025	Canola	nucleus	69.48	67.58
CDY69684	Canola	nucleus	67.87	67.33
CDY06147	Canola	nucleus	67.07	66.53
CDX76031	Canola	nucleus	66.27	65.74
AT3G56980.1	Thale cress	nucleus	67.87	65.5
CDX76026	Canola	nucleus	65.06	65.32
CDY47395	Canola	nucleus	56.22	63.35
CDX76027	Canola	nucleus	53.41	57.83
CDY47396	Canola	mitochondrion	63.05	53.22
CDY23861	Canola	cytosol, plastid	29.32	52.14
CDY14758	Canola	nucleus	47.39	49.58
CDY06938	Canola	nucleus	47.39	49.58
CDX76032	Canola	cytosol	44.58	49.55
CDX97997	Canola	nucleus	47.79	48.97
CDY72354	Canola	nucleus	47.79	48.97
VIT_13s0047g00450.t01	Wine grape	nucleus	35.74	39.56
KRG95137	Soybean	cytosol, nucleus, plastid	18.47	39.32
VIT_08s0007g05300.t01	Wine grape	nucleus	38.55	39.18
KRH66814	Soybean	nucleus	36.14	37.34
KRH66812	Soybean	cytosol, nucleus, plastid	35.34	36.51
PGSC0003DMT400076759	Potato	nucleus	26.1	36.11
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	34.94	36.1
Solyc10g079680.1.1	Tomato	nucleus	26.1	33.68
GSMUA_Achr8P22120_001	Banana	nucleus	30.12	31.25
Zm00001d042062_P001	Maize	nucleus	27.71	31.08
Zm00001d011847_P001	Maize	nucleus	28.11	30.57
TraesCS3B01G549700.1	Wheat	nucleus	24.9	29.67
TraesCS2A01G515300.1	Wheat	nucleus	30.12	29.64
TraesCS2D01G517000.1	Wheat	nucleus	29.72	29.25
GSMUA_AchrUn_...	Banana	nucleus	28.92	29.15
TraesCS2B01G543700.1	Wheat	nucleus	28.51	29.1
HORVU2Hr1G114070.1	Barley	nucleus	29.32	28.85
TraesCS2B01G543800.1	Wheat	nucleus	28.92	28.8
TraesCS3B01G550200.2	Wheat	nucleus	28.51	28.74
TraesCS3D01G495700.1	Wheat	nucleus	28.11	28.34
TraesCS3D01G495600.1	Wheat	nucleus	27.71	28.16
TraesCS3A01G489600.1	Wheat	nucleus	27.71	28.16
Solyc10g079650.1.1	Tomato	nucleus	28.11	28.0
TraesCS3A01G489700.1	Wheat	nucleus	27.71	27.94
TraesCS3B01G550000.1	Wheat	nucleus	27.31	27.76
TraesCS3D01G495400.1	Wheat	nucleus	26.51	27.73
HORVU3Hr1G108680.1	Barley	nucleus	27.31	27.64
Os01t0952800-01	Rice	nucleus	27.31	27.53
KXG34133	Sorghum	nucleus	26.91	27.46
TraesCS3B01G549800.1	Wheat	nucleus	26.1	27.31
TraesCS3A01G489400.1	Wheat	nucleus	25.3	27.16
HORVU3Hr1G108660.1	Barley	nucleus	25.3	27.16
TraesCS7B01G321400.1	Wheat	nucleus	26.91	26.91
TraesCS3A01G489500.1	Wheat	nucleus	25.7	26.89
TraesCS3D01G495300.1	Wheat	nucleus	24.9	26.5
TraesCS7A01G421000.1	Wheat	nucleus	26.91	26.38
HORVU3Hr1G108670.2	Barley	nucleus	25.3	26.25
PGSC0003DMT400076775	Potato	cytosol	10.84	25.71
CDX80905	Canola	nucleus	32.53	20.82
Solyc10g079660.1.1	Tomato	nucleus	33.33	11.91

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078BST1	EnsemblPlants:CDX67670
ProteinID:CDX67670	ProteinID:CDX67670.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00098841001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEA422	InterPro:bHLH_dom	:	:

Description

BnaA07g17100D

Coordinates

chrLK031787:-:1650472..1651360

Molecular Weight (calculated)

28183.5 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.453

Length

249 amino acids

Sequence
(BLAST)

001: MCELGPALFP KFGMELTGEH ESYSTNATSF LDFPVPNTHG VAHHETSFGV SVSSEVNGID NHSVMIKKLC HNANERNRRK KINSLFSTLR SCLPASDQLK
101: KLSIPQTVLR TVKYIPELQE QVKRLTQKKE DLMGRVSGQR DTDRYIKPQP QAVASYVSTV FATKHGDNEV MVQISSSKIH KFSIYNVLNG LEEDGFIVAD
201: VSSSSSRGER LFYTLHLQVG KTDSYKLICE ELSQRILYLY EEHGNSFRY

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.