CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97997	Canola	nucleus	100.0	100.0
Bra004609.1-P	Field mustard	nucleus	97.94	97.94
CDY23861	Canola	cytosol, plastid	53.5	92.86
CDY06938	Canola	nucleus	79.01	80.67
CDY14758	Canola	nucleus	78.19	79.83
AT2G41240.1	Thale cress	nucleus	67.49	67.77
CDX76026	Canola	nucleus	55.97	54.84
CDY47394	Canola	nucleus	56.38	53.73
CDY47392	Canola	nucleus	56.38	53.52
CDX76025	Canola	nucleus	56.38	53.52
CDY68089	Canola	nucleus	55.14	53.39
CDY69684	Canola	nucleus	54.73	52.99
CDX76031	Canola	nucleus	54.73	52.99
CDY47395	Canola	nucleus	47.33	52.04
CDY06148	Canola	nucleus	51.44	50.2
CDX85121	Canola	nucleus	50.21	49.59
CDX77489	Canola	cytosol, nucleus, plastid	49.79	49.19
CDY71388	Canola	cytosol	50.21	48.61
CDX72086	Canola	nucleus	46.91	48.31
CDX77490	Canola	nucleus	48.97	47.98
CDX67670	Canola	nucleus	48.97	47.79
CDY06149	Canola	nucleus	48.97	47.79
CDY71118	Canola	nucleus	48.56	47.58
CDX72085	Canola	nucleus	48.56	47.01
CDX76027	Canola	nucleus	44.44	46.96
CDX67671	Canola	nucleus	47.74	46.59
CDX76023	Canola	cytosol	5.35	46.43
CDY06147	Canola	nucleus	47.74	46.22
CDY47396	Canola	mitochondrion	52.26	43.05
CDX76032	Canola	cytosol	39.09	42.41
VIT_13s0047g00450.t01	Wine grape	nucleus	35.39	38.22
KRH66814	Soybean	nucleus	37.45	37.76
KRG95137	Soybean	cytosol, nucleus, plastid	18.11	37.61
KRH66812	Soybean	cytosol, nucleus, plastid	37.04	37.34
VIT_08s0007g05300.t01	Wine grape	nucleus	37.04	36.73
PGSC0003DMT400076759	Potato	nucleus	26.34	35.56
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	34.57	34.85
Solyc10g079680.1.1	Tomato	nucleus	26.75	33.68
PGSC0003DMT400076775	Potato	cytosol	13.99	32.38
Solyc10g079650.1.1	Tomato	nucleus	32.51	31.6
TraesCS2B01G543800.1	Wheat	nucleus	32.1	31.2
HORVU2Hr1G114070.1	Barley	nucleus	31.69	30.43
TraesCS2D01G517000.1	Wheat	nucleus	31.28	30.04
TraesCS2B01G543700.1	Wheat	nucleus	30.04	29.92
Zm00001d042062_P001	Maize	nucleus	27.16	29.73
Zm00001d011847_P001	Maize	nucleus	27.57	29.26
GSMUA_AchrUn_...	Banana	nucleus	29.63	29.15
TraesCS2A01G515300.1	Wheat	nucleus	30.04	28.85
GSMUA_Achr8P22120_001	Banana	nucleus	28.4	28.75
Os01t0952800-01	Rice	nucleus	29.22	28.74
TraesCS7B01G321400.1	Wheat	nucleus	29.22	28.51
TraesCS3B01G549800.1	Wheat	nucleus	27.57	28.15
TraesCS7A01G421000.1	Wheat	nucleus	29.22	27.95
TraesCS3B01G549700.1	Wheat	nucleus	23.87	27.75
TraesCS3D01G495400.1	Wheat	nucleus	27.16	27.73
HORVU3Hr1G108680.1	Barley	nucleus	27.98	27.64
HORVU3Hr1G108660.1	Barley	nucleus	26.34	27.59
TraesCS3A01G489500.1	Wheat	nucleus	26.75	27.31
TraesCS3A01G489700.1	Wheat	nucleus	27.57	27.13
TraesCS3B01G550200.2	Wheat	nucleus	27.57	27.13
TraesCS3D01G495700.1	Wheat	nucleus	27.57	27.13
KXG34133	Sorghum	nucleus	27.16	27.05
TraesCS3D01G495600.1	Wheat	nucleus	27.16	26.94
HORVU3Hr1G108670.2	Barley	nucleus	26.34	26.67
TraesCS3B01G550000.1	Wheat	nucleus	26.75	26.53
TraesCS3A01G489600.1	Wheat	nucleus	26.75	26.53
TraesCS3A01G489400.1	Wheat	nucleus	25.1	26.29
TraesCS3D01G495300.1	Wheat	nucleus	25.1	26.07
CDX80905	Canola	nucleus	31.69	19.79
Solyc10g079660.1.1	Tomato	nucleus	34.57	12.05

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	GO:A0A078EAH3	UniProt:A0A078EAH3
EnsemblPlants:CDY72354	ProteinID:CDY72354	ProteinID:CDY72354.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00027961001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935
PANTHER:PTHR13935:SF41	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE592F	InterPro:bHLH_dom	:

Description

BnaA05g34220DBnaA05g34220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EAH3]

Coordinates

chrLK050427:-:275..1336

Molecular Weight (calculated)

27347.3 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.476

Length

243 amino acids

Sequence
(BLAST)

001: MCALVPPLFP HFDWPCGDQS FFVNDDLTNT FLDFSLPDLE VAHQNASSER HGVLEVKNQV VMKKLNHNAS ERDRRKKINT MFSSLRSCLP ASDQSKKLSV
101: SATVSHALNY IPELQEQVKQ LIKKKDDLSF QISGQKDLVY ADQNGNPEKG GTRYASTVSS TRLGETEVMV QISSLQTVKC SFGNLLSGTE EDGLVLMDAS
201: SSRSQGERLF YTLHFQMDNC NLNFEELNDR LLYLYEKCGK STT

Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)

001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT

Arabidopsis Description

BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.