Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06938 | Canola | nucleus | 67.36 | 68.49 |
| CDY14758 | Canola | nucleus | 67.36 | 68.49 |
| Bra016946.1-P | Field mustard | nucleus | 66.94 | 68.07 |
| CDY23861 | Canola | cytosol, plastid | 39.26 | 67.86 |
| CDY72354 | Canola | nucleus | 67.77 | 67.49 |
| CDX97997 | Canola | nucleus | 67.77 | 67.49 |
| Bra004609.1-P | Field mustard | nucleus | 67.36 | 67.08 |
| AT3G56980.1 | Thale cress | nucleus | 56.61 | 53.1 |
| AT3G56970.1 | Thale cress | nucleus | 54.55 | 52.17 |
| KRH66814 | Soybean | nucleus | 38.84 | 39.0 |
| VIT_13s0047g00450.t01 | Wine grape | nucleus | 35.95 | 38.67 |
| KRH66812 | Soybean | cytosol, nucleus, plastid | 37.19 | 37.34 |
| VIT_08s0007g05300.t01 | Wine grape | nucleus | 37.6 | 37.14 |
| KRG95137 | Soybean | cytosol, nucleus, plastid | 17.77 | 36.75 |
| PGSC0003DMT400076759 | Potato | nucleus | 27.27 | 36.67 |
| VIT_13s0073g00400.t01 | Wine grape | extracellular, golgi, nucleus | 35.95 | 36.1 |
| Solyc10g079680.1.1 | Tomato | nucleus | 28.51 | 35.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.06 | 32.39 |
| HORVU2Hr1G114070.1 | Barley | nucleus | 33.47 | 32.02 |
| TraesCS2B01G543800.1 | Wheat | nucleus | 33.06 | 32.0 |
| TraesCS2B01G543700.1 | Wheat | nucleus | 32.23 | 31.97 |
| Solyc10g079650.1.1 | Tomato | nucleus | 32.64 | 31.6 |
| TraesCS2D01G517000.1 | Wheat | nucleus | 32.64 | 31.23 |
| Zm00001d042062_P001 | Maize | nucleus | 28.51 | 31.08 |
| Zm00001d011847_P001 | Maize | nucleus | 29.34 | 31.0 |
| TraesCS2A01G515300.1 | Wheat | nucleus | 32.23 | 30.83 |
| PGSC0003DMT400076775 | Potato | cytosol | 13.22 | 30.48 |
| GSMUA_Achr8P22120_001 | Banana | nucleus | 30.17 | 30.42 |
| AT5G04150.1 | Thale cress | nucleus | 31.82 | 29.62 |
| KXG34133 | Sorghum | nucleus | 29.34 | 29.1 |
| TraesCS3B01G549700.1 | Wheat | nucleus | 24.79 | 28.71 |
| TraesCS3A01G489700.1 | Wheat | nucleus | 28.51 | 27.94 |
| TraesCS3D01G495700.1 | Wheat | nucleus | 28.51 | 27.94 |
| TraesCS3A01G489500.1 | Wheat | nucleus | 27.27 | 27.73 |
| TraesCS3D01G495400.1 | Wheat | nucleus | 27.27 | 27.73 |
| HORVU3Hr1G108680.1 | Barley | nucleus | 28.1 | 27.64 |
| HORVU3Hr1G108660.1 | Barley | nucleus | 26.45 | 27.59 |
| Os01t0952800-01 | Rice | nucleus | 28.1 | 27.53 |
| TraesCS3B01G550200.2 | Wheat | nucleus | 28.1 | 27.53 |
| HORVU3Hr1G108670.2 | Barley | nucleus | 27.27 | 27.5 |
| TraesCS3D01G495600.1 | Wheat | nucleus | 27.69 | 27.35 |
| TraesCS3B01G549800.1 | Wheat | nucleus | 26.86 | 27.31 |
| TraesCS3A01G489400.1 | Wheat | nucleus | 26.03 | 27.16 |
| TraesCS3B01G550000.1 | Wheat | nucleus | 27.27 | 26.94 |
| TraesCS3A01G489600.1 | Wheat | nucleus | 27.27 | 26.94 |
| TraesCS7B01G321400.1 | Wheat | nucleus | 27.27 | 26.51 |
| TraesCS3D01G495300.1 | Wheat | nucleus | 25.21 | 26.07 |
| TraesCS7A01G421000.1 | Wheat | nucleus | 26.86 | 25.59 |
| Solyc10g079660.1.1 | Tomato | nucleus | 34.71 | 12.05 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.6 | MapMan:25.5.1.3 | Gene3D:4.10.280.10 | EntrezGene:818723 | UniProt:A0A178VX33 |
| ProteinID:AAC78547.1 | EMBL:AB493585 | ProteinID:AEC09951.1 | ProteinID:AEC09952.1 | EMBL:AF488626 | ArrayExpress:AT2G41240 |
| EnsemblPlantsGene:AT2G41240 | RefSeq:AT2G41240 | TAIR:AT2G41240 | RefSeq:AT2G41240-TAIR-G | EnsemblPlants:AT2G41240.1 | TAIR:AT2G41240.1 |
| EMBL:AY074635 | Symbol:BHLH100 | UniProt:C0SV82 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0009991 | GO:GO:0010106 |
| GO:GO:0019725 | GO:GO:0046983 | GO:GO:0055072 | GO:GO:0090575 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
| InterPro:IPR036638 | InterPro:MASH1/Ascl1a-like | RefSeq:NP_181657.1 | RefSeq:NP_850349.1 | ProteinID:OAP10907.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR13935 | PANTHER:PTHR13935:SF41 | UniProt:Q9ZVB5 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI00000AB9E8 | InterPro:bHLH_dom | : | : | : | : |
Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
Coordinates
chr2:-:17198037..17199454
Molecular Weight (calculated)
27218.1 Da
IEP (calculated)
6.248
GRAVY (calculated)
-0.506
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.