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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72354 Canola nucleus 97.94 97.94
CDX97997 Canola nucleus 97.94 97.94
CDY23861 Canola cytosol, plastid 53.5 92.86
Bra016946.1-P Field mustard nucleus 77.37 78.99
AT2G41240.1 Thale cress nucleus 67.08 67.36
Bra014657.1-P Field mustard nucleus 58.44 56.57
Bra014658.1-P Field mustard nucleus 56.38 55.24
Bra014659.1-P Field mustard nucleus 57.2 54.3
Bra014654.1-P Field mustard nucleus 54.73 52.99
Bra003261.1-P Field mustard mitochondrion 39.09 51.63
Bra007290.1-P Field mustard nucleus 51.85 50.6
Bra014971.1-P Field mustard cytosol, nucleus, plastid 50.21 49.59
Bra003260.1-P Field mustard nucleus 50.62 49.4
Bra007289.1-P Field mustard nucleus 49.38 48.19
Bra014970.1-P Field mustard nucleus 48.15 47.18
Bra041013.1-P Field mustard nucleus 48.56 47.01
Bra014653.1-P Field mustard cytosol 39.92 43.3
VIT_13s0047g00450.t01 Wine grape nucleus 35.8 38.67
KRG95137 Soybean cytosol, nucleus, plastid 18.11 37.61
KRH66814 Soybean nucleus 37.04 37.34
VIT_08s0007g05300.t01 Wine grape nucleus 37.45 37.14
KRH66812 Soybean cytosol, nucleus, plastid 36.63 36.93
PGSC0003DMT400076759 Potato nucleus 26.75 36.11
VIT_13s0073g00400.t01 Wine grape extracellular, golgi, nucleus 34.98 35.27
Solyc10g079680.1.1 Tomato nucleus 27.16 34.2
PGSC0003DMT400076775 Potato cytosol 13.99 32.38
Solyc10g079650.1.1 Tomato nucleus 32.51 31.6
TraesCS2B01G543800.1 Wheat nucleus 32.51 31.6
HORVU2Hr1G114070.1 Barley nucleus 32.1 30.83
TraesCS2D01G517000.1 Wheat nucleus 31.69 30.43
TraesCS2B01G543700.1 Wheat nucleus 30.45 30.33
Zm00001d042062_P001 Maize nucleus 27.57 30.18
Zm00001d011847_P001 Maize nucleus 27.98 29.69
GSMUA_Achr8P22120_001 Banana nucleus 29.22 29.58
TraesCS2A01G515300.1 Wheat nucleus 30.45 29.25
GSMUA_AchrUn_... Banana nucleus 29.63 29.15
Os01t0952800-01 Rice nucleus 29.63 29.15
TraesCS3B01G549800.1 Wheat nucleus 28.4 28.99
TraesCS7B01G321400.1 Wheat nucleus 29.63 28.92
TraesCS7A01G421000.1 Wheat nucleus 30.04 28.74
TraesCS3B01G549700.1 Wheat nucleus 24.69 28.71
TraesCS3D01G495400.1 Wheat nucleus 27.98 28.57
HORVU3Hr1G108680.1 Barley nucleus 28.81 28.46
HORVU3Hr1G108660.1 Barley nucleus 27.16 28.45
TraesCS3A01G489500.1 Wheat nucleus 27.57 28.15
TraesCS3A01G489700.1 Wheat nucleus 28.4 27.94
TraesCS3B01G550200.2 Wheat nucleus 28.4 27.94
TraesCS3D01G495700.1 Wheat nucleus 28.4 27.94
HORVU3Hr1G108670.2 Barley nucleus 27.16 27.5
KXG34133 Sorghum nucleus 27.57 27.46
TraesCS3D01G495600.1 Wheat nucleus 27.57 27.35
TraesCS3A01G489400.1 Wheat nucleus 25.93 27.16
TraesCS3B01G550000.1 Wheat nucleus 27.16 26.94
TraesCS3A01G489600.1 Wheat nucleus 27.16 26.94
TraesCS3D01G495300.1 Wheat nucleus 25.93 26.92
Solyc10g079660.1.1 Tomato nucleus 34.16 11.91
Protein Annotations
MapMan:15.5.32MapMan:25.4.1.6MapMan:25.5.1.3Gene3D:4.10.280.10EnsemblPlantsGene:Bra004609EnsemblPlants:Bra004609.1
EnsemblPlants:Bra004609.1-PGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0006139GO:GO:0006357GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638UniProt:M4CK75InterPro:MASH1/Ascl1a-like
PFAM:PF00010PFscan:PS50888PANTHER:PTHR13935PANTHER:PTHR13935:SF41SMART:SM00353SUPFAM:SSF47459
UniParc:UPI0002547687InterPro:bHLH_dom::::
Description
AT2G41240 (E=2e-101) BHLH100 | BHLH100 (BASIC HELIX-LOOP-HELIX PROTEIN 100); DNA binding / transcription factor
Coordinates
chrA05:-:1038388..1039447
Molecular Weight (calculated)
27342.4 Da
IEP (calculated)
6.242
GRAVY (calculated)
-0.456
Length
243 amino acids
Sequence
(BLAST)
001: MCALVPPLFP HFDWPCGDQS FFVNDDLTNT FLDFPLPDLE VAHQNASSER HGVLEVKNQV VMKKLNHNAS ERDRRKKINT MFSSLRSCLP ASDQSKKLSV
101: SATVSHALNY IPELQEQVKQ LIKKKDDLCF QISGQKDLVY ADQNGNPEKG GTRYASTVSA TRLGETEVMV QISSLQTVKC SFGNLLSGTE EDGLVLMDAS
201: SSRSQGERLF YTLHFQMNNC NLNFEELNDR LLYLYEKCGK SST
Best Arabidopsis Sequence Match ( AT2G41240.1 )
(BLAST)
001: MCALVPPLYP NFGWPCGDHS FYETDDVSNT FLDFPLPDLT VTHENVSSEN NRTLLDNPVV MKKLNHNASE RERRKKINTM FSSLRSCLPP TNQTKKLSVS
101: ATVSQALKYI PELQEQVKKL MKKKEELSFQ ISGQRDLVYT DQNSKSEEGV TSYASTVSST RLSETEVMVQ ISSLQTEKCS FGNVLSGVEE DGLVLVGASS
201: SRSHGERLFY SMHLQIKNGQ VNSEELGDRL LYLYEKCGHS FT
Arabidopsis Description
BHLH100BHLH100 [Source:UniProtKB/TrEMBL;Acc:A0A178VX33]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.