Factsheet for Bra014971.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000495.1-P
Bra011972.1-P
Bra034392.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56980.1	Bra000495.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra011972.1-P	AT2G28160.1	18268542
AT3G56980.1	Bra034392.1-P	AT2G28160.1	18268542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77489	Canola	cytosol, nucleus, plastid	99.59	99.59
Bra007290.1-P	Field mustard	nucleus	78.46	77.51
Bra007289.1-P	Field mustard	nucleus	76.83	75.9
Bra014970.1-P	Field mustard	nucleus	76.42	75.81
Bra041013.1-P	Field mustard	nucleus	72.76	71.31
Bra003260.1-P	Field mustard	nucleus	71.95	71.08
Bra003261.1-P	Field mustard	mitochondrion	52.85	70.65
Bra014658.1-P	Field mustard	nucleus	70.73	70.16
Bra014657.1-P	Field mustard	nucleus	71.54	70.12
Bra014659.1-P	Field mustard	nucleus	71.14	68.36
AT3G56980.1	Thale cress	nucleus	71.54	68.22
Bra014654.1-P	Field mustard	nucleus	68.7	67.33
Bra016946.1-P	Field mustard	nucleus	50.0	51.68
Bra014653.1-P	Field mustard	cytosol	46.34	50.89
Bra004609.1-P	Field mustard	nucleus	49.59	50.21
KRG95137	Soybean	cytosol, nucleus, plastid	18.29	38.46
VIT_13s0047g00450.t01	Wine grape	nucleus	34.96	38.22
VIT_08s0007g05300.t01	Wine grape	nucleus	36.99	37.14
KRH66812	Soybean	cytosol, nucleus, plastid	34.15	34.85
KRH66814	Soybean	nucleus	34.15	34.85
PGSC0003DMT400076759	Potato	nucleus	25.2	34.44
VIT_13s0073g00400.t01	Wine grape	extracellular, golgi, nucleus	33.74	34.44
Solyc10g079680.1.1	Tomato	nucleus	25.2	32.12
GSMUA_Achr8P22120_001	Banana	nucleus	30.08	30.83
Zm00001d011847_P001	Maize	nucleus	28.46	30.57
Solyc10g079650.1.1	Tomato	nucleus	30.89	30.4
GSMUA_AchrUn_...	Banana	nucleus	30.49	30.36
Zm00001d042062_P001	Maize	nucleus	27.24	30.18
TraesCS3B01G549700.1	Wheat	nucleus	25.61	30.14
PGSC0003DMT400076775	Potato	cytosol	12.6	29.52
TraesCS2B01G543700.1	Wheat	nucleus	28.46	28.69
KXG34133	Sorghum	nucleus	28.05	28.28
TraesCS3B01G550200.2	Wheat	nucleus	28.05	27.94
TraesCS3D01G495400.1	Wheat	nucleus	26.83	27.73
TraesCS2A01G515300.1	Wheat	nucleus	28.46	27.67
TraesCS2B01G543800.1	Wheat	nucleus	28.05	27.6
TraesCS3A01G489400.1	Wheat	nucleus	26.02	27.59
TraesCS3D01G495700.1	Wheat	nucleus	27.64	27.53
TraesCS3B01G549800.1	Wheat	nucleus	26.42	27.31
HORVU2Hr1G114070.1	Barley	nucleus	28.05	27.27
TraesCS2D01G517000.1	Wheat	nucleus	28.05	27.27
HORVU3Hr1G108660.1	Barley	nucleus	25.61	27.16
TraesCS3A01G489700.1	Wheat	nucleus	27.24	27.13
TraesCS3D01G495300.1	Wheat	nucleus	25.61	26.92
TraesCS3A01G489500.1	Wheat	nucleus	26.02	26.89
HORVU3Hr1G108680.1	Barley	nucleus	26.83	26.83
HORVU3Hr1G108670.2	Barley	nucleus	26.02	26.67
Os01t0952800-01	Rice	nucleus	26.42	26.32
TraesCS3A01G489600.1	Wheat	nucleus	26.02	26.12
TraesCS3D01G495600.1	Wheat	nucleus	26.02	26.12
TraesCS7B01G321400.1	Wheat	nucleus	26.42	26.1
TraesCS3B01G550000.1	Wheat	nucleus	25.61	25.71
TraesCS7A01G421000.1	Wheat	nucleus	26.02	25.2
Solyc10g079660.1.1	Tomato	nucleus	34.55	12.2

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.6	MapMan:25.5.1.3	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra014971	EnsemblPlants:Bra014971.1
EnsemblPlants:Bra014971.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DEP9
InterPro:MASH1/Ascl1a-like	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR13935	PANTHER:PTHR13935:SF41	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002540DF6	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT3G56980 (E=1e-090) BHLH039, ORG3 | BHLH039; DNA binding / transcription factor

Coordinates

chrA07:+:4689975..4690858

Molecular Weight (calculated)

27964.3 Da

IEP (calculated)

8.675

GRAVY (calculated)

-0.463

Length

246 amino acids

Sequence
(BLAST)

001: MHALGPPLFP NCGWVSRGEY ESYNLIGDNH KIGTFLDFPV PKTYGVVHHQ TSLGVSVSSE GNGINNNSVV IKKLNHNANE RSRRKKTNSL FSSLRSCLPS
101: SDEPKKLSIP QTISRSVQYI PELQEEVKKL IQKKEDLLLR ESGQRERYAK PEPKVAASYF STVFATKLRD NEVMIQISSS NIRNFSIYNV LSGLEKDGFV
201: LVDVSSSSSR REQLFCTLHL QVDKIDNYKL ICEELSQRIL YLYEEC

Best Arabidopsis Sequence Match ( AT3G56970.1 )
(BLAST)

001: MCALVPSFFT NFGWPSTNQY ESYYGAGDNL NNGTFLELTV PQTYEVTHHQ NSLGVSVSSE GNEIDNNPVV VKKLNHNASE RDRRKKINTL FSSLRSCLPA
101: SDQSKKLSIP ETVSKSLKYI PELQQQVKRL IQKKEEILVR VSGQRDFELY DKQQPKAVAS YLSTVSATRL GDNEVMVQVS SSKIHNFSIS NVLGGIEEDG
201: FVLVDVSSSR SQGERLFYTL HLQVENMDDY KINCEELSER MLYLYEKCEN SFN

Arabidopsis Description

ORG2Transcription factor ORG2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.